Uses of Interface
net.bmahe.genetics4j.core.Individual

Packages that use Individual

Package	Description
net.bmahe.genetics4j.core
net.bmahe.genetics4j.core.postevaluationprocess
net.bmahe.genetics4j.core.selection
net.bmahe.genetics4j.core.spec.selection
net.bmahe.genetics4j.core.util
net.bmahe.genetics4j.gp.selection
net.bmahe.genetics4j.gp.spec.selection
net.bmahe.genetics4j.neat
net.bmahe.genetics4j.neat.selection
net.bmahe.genetics4j.neat.spec.selection
net.bmahe.genetics4j.samples.mixturemodel

Uses of Individual in net.bmahe.genetics4j.core

Classes in net.bmahe.genetics4j.core that implement Individual

Modifier and Type	Class	Description
final class	ImmutableIndividual<T extends Comparable<T>>	Immutable implementation of Individual.

Methods in net.bmahe.genetics4j.core that return Individual

Modifier and Type	Method	Description
Individual<T>	ImmutableIndividual.Builder.build()	Builds a new Individual.
static <T extends Comparable<T>> Individual<T>	ImmutableIndividual.copyOf(Individual<T> instance)	Creates an immutable copy of a Individual value.
Individual<T>	Population.getIndividual(int index)	Returns the individual at the specified index.
Individual<T>	PopulationIterator.next()	Returns the next individual in the population and advances the iterator position.
static <T extends Comparable<T>> Individual<T>	ImmutableIndividual.of(Genotype genotype, T fitness)	Construct a new immutable Individual instance.
static <U extends Comparable<U>> Individual<U>	Individual.of(Genotype genotype, U fitness)	Creates a new individual with the specified genotype and fitness.

Methods in net.bmahe.genetics4j.core that return types with arguments of type Individual

Modifier and Type	Method	Description
Iterator<Individual<T>>	Population.iterator()

Methods in net.bmahe.genetics4j.core with parameters of type Individual

Modifier and Type	Method	Description
void	Population.add(Individual<T> individual)	Adds an individual to the population.
static <T extends Comparable<T>> Individual<T>	ImmutableIndividual.copyOf(Individual<T> instance)	Creates an immutable copy of a Individual value.
final ImmutableIndividual.Builder<T>	ImmutableIndividual.Builder.from(Individual<T> instance)	Fill a builder with attribute values from the provided Individual instance.

Method parameters in net.bmahe.genetics4j.core with type arguments of type Individual

Modifier and Type	Method	Description
static <U extends Comparable<U>> Population<U>	Population.of(List<Individual<U>> individuals)	Creates a new population from a list of individuals.

Uses of Individual in net.bmahe.genetics4j.core.postevaluationprocess

Fields in net.bmahe.genetics4j.core.postevaluationprocess with type parameters of type Individual

Modifier and Type	Field	Description
private BiFunction<Individual<T>,Double,T>	ImmutableFitnessSharing.Builder.scaleFitness
private final BiFunction<Individual<T>,Double,T>	ImmutableFitnessSharing.scaleFitness

Methods in net.bmahe.genetics4j.core.postevaluationprocess that return types with arguments of type Individual

Modifier and Type	Method	Description
abstract BiFunction<Individual<T>,Double,T>	FitnessSharing.scaleFitness()
BiFunction<Individual<T>,Double,T>	ImmutableFitnessSharing.scaleFitness()

Method parameters in net.bmahe.genetics4j.core.postevaluationprocess with type arguments of type Individual

Modifier and Type	Method	Description
final ImmutableFitnessSharing.Builder<T>	ImmutableFitnessSharing.Builder.scaleFitness(BiFunction<Individual<T>,Double,T> scaleFitness)	Initializes the value for the scaleFitness attribute.
final ImmutableFitnessSharing<T>	ImmutableFitnessSharing.withScaleFitness(BiFunction<Individual<T>,Double,T> value)	Copy the current immutable object by setting a value for the scaleFitness attribute.

Uses of Individual in net.bmahe.genetics4j.core.selection

Methods in net.bmahe.genetics4j.core.selection that return Individual

Modifier and Type	Method	Description
protected Individual<T>	SelectiveRefinementTournamentSelector.randomIndividual(List<Genotype> population, List<T> fitnessScore)
private Individual<T>	MultiTournamentsSelectionPolicyHandler.runTournament(RandomGenerator randomGenerator, List<Tournament<T>> tournaments, List<Genotype> population, List<T> fitnessScore, int tournamentIndex)
private Individual<T>	MultiTournamentsSelectionPolicyHandler.runTournament(Tournament<T> tournament, List<Genotype> population, List<T> fitnessScore, List<Individual<T>> candidates)
protected Individual<T>	SelectiveRefinementTournamentSelector.selectForFitness(AbstractEAConfiguration<T> eaConfiguration, Comparator<Individual<T>> fitnessComparator, int numCandidates, List<Genotype> population, List<T> fitnessScore)
protected Individual<T>	SelectiveRefinementTournamentSelector.selectForRefinement(Comparator<Individual<T>> refinementComparator, Individual<T> candidateA, Individual<T> candidateB)

Methods in net.bmahe.genetics4j.core.selection that return types with arguments of type Individual

Modifier and Type	Method	Description
private List<Individual<T>>	MultiTournamentsSelectionPolicyHandler.pickRandomCandidates(RandomGenerator randomGenerator, List<Genotype> population, List<T> fitnessScore, int numCandidates)

Methods in net.bmahe.genetics4j.core.selection with parameters of type Individual

Modifier and Type	Method	Description
protected Individual<T>	SelectiveRefinementTournamentSelector.selectForRefinement(Comparator<Individual<T>> refinementComparator, Individual<T> candidateA, Individual<T> candidateB)

Method parameters in net.bmahe.genetics4j.core.selection with type arguments of type Individual

Modifier and Type	Method	Description
protected Individual<T>	SelectiveRefinementTournamentSelector.selectForFitness(AbstractEAConfiguration<T> eaConfiguration, Comparator<Individual<T>> fitnessComparator, int numCandidates, List<Genotype> population, List<T> fitnessScore)
protected Individual<T>	SelectiveRefinementTournamentSelector.selectForRefinement(Comparator<Individual<T>> refinementComparator, Individual<T> candidateA, Individual<T> candidateB)

Uses of Individual in net.bmahe.genetics4j.core.spec.selection

Fields in net.bmahe.genetics4j.core.spec.selection with type parameters of type Individual

Modifier and Type	Field	Description
private Comparator<Individual<T>>	ImmutableTournament.Builder.comparator
private final Comparator<Individual<T>>	ImmutableTournament.comparator
private Comparator<Individual<T>>	ImmutableProportionalTournament.Builder.firstComparator
private final Comparator<Individual<T>>	ImmutableProportionalTournament.firstComparator
private Comparator<Individual<T>>	ImmutableSelectiveRefinementTournament.Builder.refinementComparator
private final Comparator<Individual<T>>	ImmutableSelectiveRefinementTournament.refinementComparator
private Comparator<Individual<T>>	ImmutableProportionalTournament.Builder.secondComparator
private final Comparator<Individual<T>>	ImmutableProportionalTournament.secondComparator

Methods in net.bmahe.genetics4j.core.spec.selection that return types with arguments of type Individual

Modifier and Type	Method	Description
Comparator<Individual<T>>	ImmutableTournament.comparator()
Comparator<Individual<T>>	Tournament.comparator()
Comparator<Individual<T>>	ImmutableProportionalTournament.firstComparator()
Comparator<Individual<T>>	ProportionalTournament.firstComparator()
Comparator<Individual<T>>	ImmutableSelectiveRefinementTournament.refinementComparator()	Gets the comparator used for refining the selection results.
abstract Comparator<Individual<T>>	SelectiveRefinementTournament.refinementComparator()	Gets the comparator used for refining the selection results.
Comparator<Individual<T>>	ImmutableProportionalTournament.secondComparator()
Comparator<Individual<T>>	ProportionalTournament.secondComparator()

Method parameters in net.bmahe.genetics4j.core.spec.selection with type arguments of type Individual

Modifier and Type	Method	Description
final Tournament.Builder<T>	ImmutableTournament.Builder.comparator(Comparator<Individual<T>> comparator)	Initializes the value for the comparator attribute.
final ImmutableProportionalTournament.Builder<T>	ImmutableProportionalTournament.Builder.firstComparator(Comparator<Individual<T>> firstComparator)	Initializes the value for the firstComparator attribute.
static <T extends Comparable<T>> ProportionalTournament<T>	ImmutableProportionalTournament.of(int numCandidates, double proportionFirst, Comparator<Individual<T>> firstComparator, Comparator<Individual<T>> secondComparator)	Construct a new immutable ProportionalTournament instance.
static <T extends Comparable<T>> ProportionalTournament<T>	ProportionalTournament.of(int numCandidates, double proportionFirst, Comparator<Individual<T>> firstComparator, Comparator<Individual<T>> secondComparator)
static <U extends Comparable<U>> Tournament<U>	Tournament.of(int numCandidates, Comparator<Individual<U>> comparator)
final SelectiveRefinementTournament.Builder<T>	ImmutableSelectiveRefinementTournament.Builder.refinementComparator(Comparator<Individual<T>> refinementComparator)	Initializes the value for the refinementComparator attribute.
final ImmutableProportionalTournament.Builder<T>	ImmutableProportionalTournament.Builder.secondComparator(Comparator<Individual<T>> secondComparator)	Initializes the value for the secondComparator attribute.
final ImmutableTournament<T>	ImmutableTournament.withComparator(Comparator<Individual<T>> value)	Copy the current immutable object by setting a value for the comparator attribute.
final ImmutableProportionalTournament<T>	ImmutableProportionalTournament.withFirstComparator(Comparator<Individual<T>> value)	Copy the current immutable object by setting a value for the firstComparator attribute.
final ImmutableSelectiveRefinementTournament<T>	ImmutableSelectiveRefinementTournament.withRefinementComparator(Comparator<Individual<T>> value)	Copy the current immutable object by setting a value for the refinementComparator attribute.
final ImmutableProportionalTournament<T>	ImmutableProportionalTournament.withSecondComparator(Comparator<Individual<T>> value)	Copy the current immutable object by setting a value for the secondComparator attribute.

Constructor parameters in net.bmahe.genetics4j.core.spec.selection with type arguments of type Individual

Modifier	Constructor	Description
private	ImmutableProportionalTournament(int numCandidates, double proportionFirst, Comparator<Individual<T>> firstComparator, Comparator<Individual<T>> secondComparator)
private	ImmutableProportionalTournament(ImmutableProportionalTournament<T> original, int numCandidates, double proportionFirst, Comparator<Individual<T>> firstComparator, Comparator<Individual<T>> secondComparator)
private	ImmutableSelectiveRefinementTournament(Tournament<T> tournament, Comparator<Individual<T>> refinementComparator, float refinementRatio)
private	ImmutableTournament(int numCandidates, Comparator<Individual<T>> comparator)

Uses of Individual in net.bmahe.genetics4j.core.util

Methods in net.bmahe.genetics4j.core.util that return types with arguments of type Individual

Modifier and Type	Method	Description
static <T extends Comparable<T>> Comparator<Individual<T>>	IndividualUtils.fitnessBasedComparator(AbstractEAConfiguration<T> eaConfiguration)

Uses of Individual in net.bmahe.genetics4j.gp.selection

Methods in net.bmahe.genetics4j.gp.selection that return Individual

Modifier and Type	Method	Description
protected Individual<T>	DoubleTournamentSelector.parsimonyPick(Comparator<Individual<T>> parsimonyComparator, double parsimonyTournamentSize, Individual<T> first, Individual<T> second)
protected Individual<T>	DoubleTournamentSelector.randomIndividual(List<Genotype> population, List<T> fitnessScore)
protected Individual<T>	DoubleTournamentSelector.selectForFitness(AbstractEAConfiguration<T> eaConfiguration, Comparator<Individual<T>> fitnessComparator, int numCandidates, List<Genotype> population, List<T> fitnessScore)

Methods in net.bmahe.genetics4j.gp.selection with parameters of type Individual

Modifier and Type	Method	Description
protected Individual<T>	DoubleTournamentSelector.parsimonyPick(Comparator<Individual<T>> parsimonyComparator, double parsimonyTournamentSize, Individual<T> first, Individual<T> second)

Method parameters in net.bmahe.genetics4j.gp.selection with type arguments of type Individual

Modifier and Type	Method	Description
protected Individual<T>	DoubleTournamentSelector.parsimonyPick(Comparator<Individual<T>> parsimonyComparator, double parsimonyTournamentSize, Individual<T> first, Individual<T> second)
protected Individual<T>	DoubleTournamentSelector.selectForFitness(AbstractEAConfiguration<T> eaConfiguration, Comparator<Individual<T>> fitnessComparator, int numCandidates, List<Genotype> population, List<T> fitnessScore)

Uses of Individual in net.bmahe.genetics4j.gp.spec.selection

Fields in net.bmahe.genetics4j.gp.spec.selection with type parameters of type Individual

Modifier and Type	Field	Description
private Comparator<Individual<T>>	ImmutableDoubleTournament.Builder.parsimonyComparator
private final Comparator<Individual<T>>	ImmutableDoubleTournament.parsimonyComparator

Methods in net.bmahe.genetics4j.gp.spec.selection that return types with arguments of type Individual

Modifier and Type	Method	Description
abstract Comparator<Individual<T>>	DoubleTournament.parsimonyComparator()	Comparator used to evaluate parsimony (complexity) between individuals.
Comparator<Individual<T>>	ImmutableDoubleTournament.parsimonyComparator()	Comparator used to evaluate parsimony (complexity) between individuals.

Method parameters in net.bmahe.genetics4j.gp.spec.selection with type arguments of type Individual

Modifier and Type	Method	Description
static <U extends Comparable<U>> DoubleTournament<U>	DoubleTournament.of(Tournament<U> fitnessTournament, Comparator<Individual<U>> parsimonyComparator, double parsimonyTournamentSize)	Creates a new DoubleTournament selection policy with fitness-first mode enabled.
static <T extends Comparable<T>> DoubleTournament<T>	ImmutableDoubleTournament.of(Tournament<T> fitnessTournament, Comparator<Individual<T>> parsimonyComparator, double parsimonyTournamentSize)	Construct a new immutable DoubleTournament instance.
final ImmutableDoubleTournament.Builder<T>	ImmutableDoubleTournament.Builder.parsimonyComparator(Comparator<Individual<T>> parsimonyComparator)	Initializes the value for the parsimonyComparator attribute.
final ImmutableDoubleTournament<T>	ImmutableDoubleTournament.withParsimonyComparator(Comparator<Individual<T>> value)	Copy the current immutable object by setting a value for the parsimonyComparator attribute.

Constructor parameters in net.bmahe.genetics4j.gp.spec.selection with type arguments of type Individual

Modifier	Constructor	Description
private	ImmutableDoubleTournament(Tournament<T> fitnessTournament, Comparator<Individual<T>> parsimonyComparator, double parsimonyTournamentSize)
private	ImmutableDoubleTournament(Tournament<T> fitnessTournament, Comparator<Individual<T>> parsimonyComparator, double parsimonyTournamentSize, boolean doFitnessFirst)

Uses of Individual in net.bmahe.genetics4j.neat

Fields in net.bmahe.genetics4j.neat with type parameters of type Individual

Modifier and Type	Field	Description
private final List<Individual<T>>	Species.ancestors
private final List<Individual<T>>	Species.members

Methods in net.bmahe.genetics4j.neat that return types with arguments of type Individual

Modifier and Type	Method	Description
List<Individual<T>>	Species.getAncestors()	Returns the list of ancestors for this species.
List<Individual<T>>	Species.getMembers()	Returns the list of current members in this species.

Methods in net.bmahe.genetics4j.neat with parameters of type Individual

Modifier and Type	Method	Description
void	Species.addAncestor(Individual<T> individual)	Adds an individual as an ancestor of this species.
void	Species.addMember(Individual<T> individual)	Adds an individual as a member of this species.

Method parameters in net.bmahe.genetics4j.neat with type arguments of type Individual

Modifier and Type	Method	Description
void	Species.addAllMembers(Collection<Individual<T>> individuals)	Adds multiple individuals as members of this species.
static <T extends Comparable<T>> List<Species<T>>	NeatUtils.speciate(RandomGenerator random, SpeciesIdGenerator speciesIdGenerator, List<Species<T>> seedSpecies, Population<T> population, BiPredicate<Individual<T>,Individual<T>> speciesPredicate)
static <T extends Comparable<T>> List<Species<T>>	NeatUtils.speciate(RandomGenerator random, SpeciesIdGenerator speciesIdGenerator, List<Species<T>> seedSpecies, Population<T> population, BiPredicate<Individual<T>,Individual<T>> speciesPredicate)

Constructor parameters in net.bmahe.genetics4j.neat with type arguments of type Individual

Modifier	Constructor	Description
	Species(int _id, List<Individual<T>> _ancestors)	Constructs a new species with the specified ID and founding ancestors.

Uses of Individual in net.bmahe.genetics4j.neat.selection

Method parameters in net.bmahe.genetics4j.neat.selection with type arguments of type Individual

Modifier and Type	Method	Description
protected Species<T>	NeatSelectorImpl.trimSpecies(Species<T> species, Comparator<Individual<T>> comparator, int minSpeciesSize, float perSpeciesKeepRatio)	Trims a species by removing lower-performing individuals while preserving minimum viable size.

Uses of Individual in net.bmahe.genetics4j.neat.spec.selection

Fields in net.bmahe.genetics4j.neat.spec.selection with type parameters of type Individual

Modifier and Type	Field	Description
private BiPredicate<Individual<T>,Individual<T>>	ImmutableNeatSelection.Builder.speciesPredicate
private BiPredicate<Individual<T>,Individual<T>>	ImmutableNeatSelection.Builder.speciesPredicate
private final BiPredicate<Individual<T>,Individual<T>>	ImmutableNeatSelection.speciesPredicate
private final BiPredicate<Individual<T>,Individual<T>>	ImmutableNeatSelection.speciesPredicate

Methods in net.bmahe.genetics4j.neat.spec.selection that return types with arguments of type Individual

Modifier and Type	Method	Description
BiPredicate<Individual<T>,Individual<T>>	ImmutableNeatSelection.speciesPredicate()	Returns the predicate used to determine species membership.
BiPredicate<Individual<T>,Individual<T>>	ImmutableNeatSelection.speciesPredicate()	Returns the predicate used to determine species membership.
abstract BiPredicate<Individual<T>,Individual<T>>	NeatSelection.speciesPredicate()	Returns the predicate used to determine species membership.
abstract BiPredicate<Individual<T>,Individual<T>>	NeatSelection.speciesPredicate()	Returns the predicate used to determine species membership.

Method parameters in net.bmahe.genetics4j.neat.spec.selection with type arguments of type Individual

Modifier and Type	Method	Description
static <U extends Comparable<U>> NeatSelection<U>	NeatSelection.of(float perSpeciesKeepRatio, BiPredicate<Individual<U>,Individual<U>> speciesPredicate, SelectionPolicy speciesSelection)	Creates a NEAT selection policy with custom keep ratio and specified parameters.
static <U extends Comparable<U>> NeatSelection<U>	NeatSelection.of(float perSpeciesKeepRatio, BiPredicate<Individual<U>,Individual<U>> speciesPredicate, SelectionPolicy speciesSelection)	Creates a NEAT selection policy with custom keep ratio and specified parameters.
static <U extends Comparable<U>> NeatSelection<U>	NeatSelection.of(BiPredicate<Individual<U>,Individual<U>> speciesPredicate, SelectionPolicy speciesSelection)	Creates a NEAT selection policy with default keep ratio and specified parameters.
static <U extends Comparable<U>> NeatSelection<U>	NeatSelection.of(BiPredicate<Individual<U>,Individual<U>> speciesPredicate, SelectionPolicy speciesSelection)	Creates a NEAT selection policy with default keep ratio and specified parameters.
final NeatSelection.Builder<T>	ImmutableNeatSelection.Builder.speciesPredicate(BiPredicate<Individual<T>,Individual<T>> speciesPredicate)	Initializes the value for the speciesPredicate attribute.
final NeatSelection.Builder<T>	ImmutableNeatSelection.Builder.speciesPredicate(BiPredicate<Individual<T>,Individual<T>> speciesPredicate)	Initializes the value for the speciesPredicate attribute.
final ImmutableNeatSelection<T>	ImmutableNeatSelection.withSpeciesPredicate(BiPredicate<Individual<T>,Individual<T>> value)	Copy the current immutable object by setting a value for the speciesPredicate attribute.
final ImmutableNeatSelection<T>	ImmutableNeatSelection.withSpeciesPredicate(BiPredicate<Individual<T>,Individual<T>> value)	Copy the current immutable object by setting a value for the speciesPredicate attribute.

Constructor parameters in net.bmahe.genetics4j.neat.spec.selection with type arguments of type Individual

Modifier	Constructor	Description
private	ImmutableNeatSelection(float perSpeciesKeepRatio, int minSpeciesSize, BiPredicate<Individual<T>,Individual<T>> speciesPredicate, SelectionPolicy speciesSelection)
private	ImmutableNeatSelection(float perSpeciesKeepRatio, int minSpeciesSize, BiPredicate<Individual<T>,Individual<T>> speciesPredicate, SelectionPolicy speciesSelection)

Uses of Individual in net.bmahe.genetics4j.samples.mixturemodel

Methods in net.bmahe.genetics4j.samples.mixturemodel that return types with arguments of type Individual

Modifier and Type	Method	Description
static Map<Integer,Individual<FitnessVector<Float>>>	ClusteringUtils.groupByNumClusters(double[][] samplesDouble, EvolutionResult<FitnessVector<Float>> evolutionResult)