|
1
|
|
package net.bmahe.genetics4j.core.mutation.chromosome.randommutation; |
|
2
|
|
|
|
3
|
|
import java.util.Arrays; |
|
4
|
|
import java.util.random.RandomGenerator; |
|
5
|
|
|
|
6
|
|
import org.apache.commons.lang3.Validate; |
|
7
|
|
|
|
8
|
|
import net.bmahe.genetics4j.core.chromosomes.Chromosome; |
|
9
|
|
import net.bmahe.genetics4j.core.chromosomes.IntChromosome; |
|
10
|
|
import net.bmahe.genetics4j.core.mutation.chromosome.ChromosomeMutationHandler; |
|
11
|
|
import net.bmahe.genetics4j.core.spec.chromosome.ChromosomeSpec; |
|
12
|
|
import net.bmahe.genetics4j.core.spec.chromosome.IntChromosomeSpec; |
|
13
|
|
import net.bmahe.genetics4j.core.spec.mutation.MutationPolicy; |
|
14
|
|
import net.bmahe.genetics4j.core.spec.mutation.RandomMutation; |
|
15
|
|
|
|
16
|
|
public class IntChromosomeRandomMutationHandler implements ChromosomeMutationHandler<IntChromosome> { |
|
17
|
|
|
|
18
|
|
private final RandomGenerator randomGenerator; |
|
19
|
|
|
|
20
|
|
public IntChromosomeRandomMutationHandler(final RandomGenerator _randomGenerator) { |
|
21
|
|
Validate.notNull(_randomGenerator); |
|
22
|
|
|
|
23
|
1
1. <init> : Removed assignment to member variable randomGenerator → KILLED
|
this.randomGenerator = _randomGenerator; |
|
24
|
|
} |
|
25
|
|
|
|
26
|
|
@Override |
|
27
|
|
public boolean canHandle(final MutationPolicy mutationPolicy, final ChromosomeSpec chromosome) { |
|
28
|
|
Validate.notNull(mutationPolicy); |
|
29
|
|
Validate.notNull(chromosome); |
|
30
|
|
|
|
31
|
9
1. canHandle : removed conditional - replaced equality check with true → SURVIVED
2. canHandle : negated conditional → KILLED
3. canHandle : Substituted 1 with 0 → KILLED
4. canHandle : removed conditional - replaced equality check with false → KILLED
5. canHandle : Substituted 0 with 1 → KILLED
6. canHandle : removed conditional - replaced equality check with false → KILLED
7. canHandle : replaced boolean return with true for net/bmahe/genetics4j/core/mutation/chromosome/randommutation/IntChromosomeRandomMutationHandler::canHandle → KILLED
8. canHandle : negated conditional → KILLED
9. canHandle : removed conditional - replaced equality check with true → KILLED
|
return mutationPolicy instanceof RandomMutation && chromosome instanceof IntChromosomeSpec; |
|
32
|
|
} |
|
33
|
|
|
|
34
|
|
@Override |
|
35
|
|
public IntChromosome mutate(final MutationPolicy mutationPolicy, final Chromosome chromosome) { |
|
36
|
|
Validate.notNull(mutationPolicy); |
|
37
|
|
Validate.notNull(chromosome); |
|
38
|
|
Validate.isInstanceOf(RandomMutation.class, mutationPolicy); |
|
39
|
|
Validate.isInstanceOf(IntChromosome.class, chromosome); |
|
40
|
|
|
|
41
|
|
final IntChromosome intChromosome = (IntChromosome) chromosome; |
|
42
|
|
|
|
43
|
4
1. mutate : replaced call to java/util/Arrays::copyOf with argument → SURVIVED
2. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getNumAlleles → KILLED
3. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getValues → KILLED
4. mutate : removed call to java/util/Arrays::copyOf → KILLED
|
final int[] newValues = Arrays.copyOf(intChromosome.getValues(), intChromosome.getNumAlleles()); |
|
44
|
|
|
|
45
|
3
1. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getNumAlleles → KILLED
2. mutate : replaced call to java/util/random/RandomGenerator::nextInt with argument → KILLED
3. mutate : removed call to java/util/random/RandomGenerator::nextInt → KILLED
|
final int alleleFlipIndex = randomGenerator.nextInt(intChromosome.getNumAlleles()); |
|
46
|
5
1. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMinValue → SURVIVED
2. mutate : Replaced integer subtraction with addition → SURVIVED
3. mutate : replaced call to java/util/random/RandomGenerator::nextInt with argument → KILLED
4. mutate : removed call to java/util/random/RandomGenerator::nextInt → KILLED
5. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMaxValue → KILLED
|
newValues[alleleFlipIndex] = randomGenerator.nextInt(intChromosome.getMaxValue() - intChromosome.getMinValue()) |
|
47
|
2
1. mutate : Replaced integer addition with subtraction → SURVIVED
2. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMinValue → SURVIVED
|
+ intChromosome.getMinValue(); |
|
48
|
|
|
|
49
|
2
1. mutate : replaced return value with null for net/bmahe/genetics4j/core/mutation/chromosome/randommutation/IntChromosomeRandomMutationHandler::mutate → KILLED
2. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getSize → KILLED
|
return new IntChromosome(intChromosome.getSize(), |
|
50
|
1
1. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMinValue → SURVIVED
|
intChromosome.getMinValue(), |
|
51
|
2
1. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMaxValue → SURVIVED
2. mutate : removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::<init> → KILLED
|
intChromosome.getMaxValue(), |
|
52
|
|
newValues); |
|
53
|
|
} |
|
54
|
|
} |
| | Mutations |
| 23 |
|
1.1 Location : <init> Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] Removed assignment to member variable randomGenerator → KILLED
|
| 31 |
|
1.1 Location : canHandle Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:canHandle()] negated conditional → KILLED
2.2 Location : canHandle Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:canHandle()] Substituted 1 with 0 → KILLED
3.3 Location : canHandle Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:canHandle()] removed conditional - replaced equality check with false → KILLED
4.4 Location : canHandle Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:canHandle()] Substituted 0 with 1 → KILLED
5.5 Location : canHandle Killed by : none removed conditional - replaced equality check with true → SURVIVED
Covering tests
Covered by tests:
- net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:canHandle()]
- net.bmahe.genetics4j.core.mutation.SupersimpleTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.SupersimpleTest]/[method:simple()]
- net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()]
6.6 Location : canHandle Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:canHandle()] removed conditional - replaced equality check with false → KILLED
7.7 Location : canHandle Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:canHandle()] replaced boolean return with true for net/bmahe/genetics4j/core/mutation/chromosome/randommutation/IntChromosomeRandomMutationHandler::canHandle → KILLED
8.8 Location : canHandle Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:canHandle()] negated conditional → KILLED
9.9 Location : canHandle Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:canHandle()] removed conditional - replaced equality check with true → KILLED
|
| 43 |
|
1.1 Location : mutate Killed by : none replaced call to java/util/Arrays::copyOf with argument → SURVIVED
Covering tests
Covered by tests:
- net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()]
- net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()]
2.2 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getNumAlleles → KILLED
3.3 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getValues → KILLED
4.4 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] removed call to java/util/Arrays::copyOf → KILLED
|
| 45 |
|
1.1 Location : mutate Killed by : net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()] removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getNumAlleles → KILLED
2.2 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] replaced call to java/util/random/RandomGenerator::nextInt with argument → KILLED
3.3 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] removed call to java/util/random/RandomGenerator::nextInt → KILLED
|
| 46 |
|
1.1 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] replaced call to java/util/random/RandomGenerator::nextInt with argument → KILLED
2.2 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] removed call to java/util/random/RandomGenerator::nextInt → KILLED
3.3 Location : mutate Killed by : none removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMinValue → SURVIVED
Covering tests
Covered by tests:
- net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()]
- net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()]
4.4 Location : mutate Killed by : net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()] removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMaxValue → KILLED
5.5 Location : mutate Killed by : none Replaced integer subtraction with addition → SURVIVED
Covering tests
Covered by tests:
- net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()]
- net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()]
|
| 47 |
|
1.1 Location : mutate Killed by : none Replaced integer addition with subtraction → SURVIVED
Covering tests
Covered by tests:
- net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()]
- net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()]
2.2 Location : mutate Killed by : none removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMinValue → SURVIVED
Covering tests
Covered by tests:
- net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()]
- net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()]
|
| 49 |
|
1.1 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] replaced return value with null for net/bmahe/genetics4j/core/mutation/chromosome/randommutation/IntChromosomeRandomMutationHandler::mutate → KILLED
2.2 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getSize → KILLED
|
| 50 |
|
1.1 Location : mutate Killed by : none removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMinValue → SURVIVED
Covering tests
Covered by tests:
- net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()]
- net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()]
|
| 51 |
|
1.1 Location : mutate Killed by : net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()] removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::<init> → KILLED
2.2 Location : mutate Killed by : none removed call to net/bmahe/genetics4j/core/chromosomes/IntChromosome::getMaxValue → SURVIVED
Covering tests
Covered by tests:
- net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.mutation.chromosome.randommutation.IntChromosomeRandomMutationHandlerTest]/[method:mutateValidate()]
- net.bmahe.genetics4j.core.EASystemTest.[engine:junit-jupiter]/[class:net.bmahe.genetics4j.core.EASystemTest]/[method:testEvolveWithIntChromosome()]
|