Index (Samples 4.2-SNAPSHOT API)

A B C D E F G H I L M N O P Q R S T W X Y
All Classes and Interfaces|All Packages|Constant Field Values

A

a_i(double[][], double[][], Map<Integer, Set<Integer>>, int, int) - Static method in class net.bmahe.genetics4j.samples.clustering.FitnessUtils
apacheCommonsMathCluster(double[][], double[][]) - Static method in class net.bmahe.genetics4j.samples.clustering.Clustering
assignClustersDoubleChromosome(int, double[][], Genotype) - Static method in class net.bmahe.genetics4j.samples.mixturemodel.ClusteringUtils
assignClustersFloatChromosome(int, double[][], Genotype) - Static method in class net.bmahe.genetics4j.samples.mixturemodel.ClusteringUtils
assignDataToClusters(double[][], double[][], double[][]) - Static method in class net.bmahe.genetics4j.samples.clustering.FitnessUtils
attributes - Variable in class net.bmahe.genetics4j.samples.TSPLIBProblem

B

b_i(double[][], double[][], Map<Integer, Set<Integer>>, int, int, int) - Static method in class net.bmahe.genetics4j.samples.clustering.FitnessUtils
baseDir - Variable in class net.bmahe.genetics4j.samples.mixturemodel.MooCPU
baseDir - Variable in class net.bmahe.genetics4j.samples.mixturemodel.MooGPU
baseDir - Variable in class net.bmahe.genetics4j.samples.mixturemodel.SingleObjectiveMethod
buildProgram(Random) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionUtils

C

categorizeByNumClusters(int, int, float[], float[], double[][], EvolutionResult<FitnessVector<Float>>, String, String) - Static method in class net.bmahe.genetics4j.samples.mixturemodel.ClusteringUtils
cities - Variable in class net.bmahe.genetics4j.samples.TSPLIBProblem
cliError(Options, String) - Static method in class net.bmahe.genetics4j.samples.clustering.Clustering
cliError(Options, String) - Static method in class net.bmahe.genetics4j.samples.FitnessSharingExample
cliError(Options, String) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
cliError(Options, String) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
cliError(Options, String) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
cliError(Options, String) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
cliError(Options, String) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
cliError(Options, String) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod
cliHelpAndExit(Logger, Class<?>, Options, String) - Static method in class net.bmahe.genetics4j.samples.CLIUtils
CLIUtils - Class in net.bmahe.genetics4j.samples
CLIUtils() - Constructor for class net.bmahe.genetics4j.samples.CLIUtils
clusterDistance - Static variable in class net.bmahe.genetics4j.samples.clustering.FitnessSharingUtils
Clustering - Class in net.bmahe.genetics4j.samples.clustering
Clustering() - Constructor for class net.bmahe.genetics4j.samples.clustering.Clustering
ClusteringUtils - Class in net.bmahe.genetics4j.samples.mixturemodel
ClusteringUtils() - Constructor for class net.bmahe.genetics4j.samples.mixturemodel.ClusteringUtils
computeAllDistances(double[][]) - Static method in class net.bmahe.genetics4j.samples.clustering.Clustering
computeDistance(double[][], int, int) - Static method in class net.bmahe.genetics4j.samples.clustering.Clustering
computeFitness(int, double[][], double[][], int) - Static method in class net.bmahe.genetics4j.samples.clustering.FitnessUtils
computeFitnessWithSSE(int, double[][], double[][], int) - Static method in class net.bmahe.genetics4j.samples.clustering.FitnessUtils
computeSideData(int) - Method in class net.bmahe.genetics4j.samples.mixturemodel.MooGPU
computeSilhouetteScore(double[][], double[][], int, Map<Integer, Set<Integer>>, int[], int) - Static method in class net.bmahe.genetics4j.samples.clustering.FitnessUtils
computeSumSquaredErrors(double[][], double[][], double[][], Map<Integer, Set<Integer>>, int[]) - Static method in class net.bmahe.genetics4j.samples.clustering.FitnessUtils
csvLogger(String, Function<EvolutionStep<FitnessVector<Double>, List<Set<Integer>>>, Double>, Function<EvolutionStep<FitnessVector<Double>, List<Set<Integer>>>, Double>) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionUtils: Sepcialization for FitnessVector
csvLogger(String, Function<EvolutionStep<T, List<Set<Integer>>>, Double>, Function<EvolutionStep<T, List<Set<Integer>>>, Double>, BiFunction<List<Genotype>, List<T>, List<FitnessVector<Double>>>) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionUtils
csvLoggerDouble(String, Function<EvolutionStep<Double, List<Set<Integer>>>, Double>, Function<EvolutionStep<Double, List<Set<Integer>>>, Double>) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionUtils: Sepcialization for Double

D

deduplicator - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
deduplicator - Variable in class net.bmahe.genetics4j.samples.mixturemodel.MooCPU
deduplicator - Variable in class net.bmahe.genetics4j.samples.mixturemodel.MooGPU
DEFAULT_COMBINATION_ARITHMETIC - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
DEFAULT_COMBINATION_CROSSOVER_ARITHMETIC - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
DEFAULT_CREEP_MUTATION_MEAN - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
DEFAULT_CREEP_MUTATION_RATE - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
DEFAULT_CREEP_MUTATION_STDDEV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
DEFAULT_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.neat.Main
DEFAULT_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
DEFAULT_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
DEFAULT_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
DEFAULT_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
DEFAULT_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
DEFAULT_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod
DEFAULT_DEST_CSV_WITH_SHARING - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
DEFAULT_DEST_CSV_WITHOUT_SHARING - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
DEFAULT_NUM_CLUSTERS - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
DEFAULT_NUMBER_TOURNAMENTS - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
DEFAULT_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
DEFAULT_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
DEFAULT_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.neat.Main
DEFAULT_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
DEFAULT_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
DEFAULT_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
DEFAULT_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
DEFAULT_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
DEFAULT_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod
DEFAULT_RANDOM_MUTATION_RATE - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
distance(Position, Position) - Static method in class net.bmahe.genetics4j.samples.TSVExample
DISTRIBUTION_NUM_PARAMETERS - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
distributionNumParameters - Variable in class net.bmahe.genetics4j.samples.mixturemodel.MooCPU
distributionNumParameters - Variable in class net.bmahe.genetics4j.samples.mixturemodel.MooGPU
distributionNumParameters - Variable in class net.bmahe.genetics4j.samples.mixturemodel.SingleObjectiveMethod
doGA(int, double, double, int, int, int, double, double, double, double, Fitness<Double>, Termination<Double>, int, String, double[][], double[][], String, String) - Static method in class net.bmahe.genetics4j.samples.clustering.Clustering

E

EPSILON - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
equals(Object) - Method in class net.bmahe.genetics4j.samples.TSPLIBProblem
evaluate(double) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionUtils
executeNEATXor(Optional<String>, int, String) - Static method in class net.bmahe.genetics4j.samples.neat.Main

F

fitnessCPU(int, double[][]) - Method in class net.bmahe.genetics4j.samples.mixturemodel.MooCPU
fitnessCPU(int, double[][]) - Method in class net.bmahe.genetics4j.samples.mixturemodel.SingleObjectiveMethod
fitnessExtractor(int, double[][]) - Method in class net.bmahe.genetics4j.samples.mixturemodel.MooGPU
fitnessNEAT(boolean) - Static method in class net.bmahe.genetics4j.samples.neat.Main
FitnessSharingExample - Class in net.bmahe.genetics4j.samples
FitnessSharingExample() - Constructor for class net.bmahe.genetics4j.samples.FitnessSharingExample
FitnessSharingUtils - Class in net.bmahe.genetics4j.samples.clustering
FitnessSharingUtils() - Constructor for class net.bmahe.genetics4j.samples.clustering.FitnessSharingUtils
FitnessUtils - Class in net.bmahe.genetics4j.samples.clustering
FitnessUtils() - Constructor for class net.bmahe.genetics4j.samples.clustering.FitnessUtils

G

generateClusters(Random, int, double, double, double, double) - Static method in class net.bmahe.genetics4j.samples.clustering.Clustering
generateDataPoints(Random, double[][], int, double) - Static method in class net.bmahe.genetics4j.samples.clustering.Clustering
getAttributes() - Method in class net.bmahe.genetics4j.samples.TSPLIBProblem
getCities() - Method in class net.bmahe.genetics4j.samples.TSPLIBProblem
getPoint() - Method in class net.bmahe.genetics4j.samples.clustering.LocationWrapper
groupByNumClusters(double[][], EvolutionResult<FitnessVector<Float>>) - Static method in class net.bmahe.genetics4j.samples.mixturemodel.ClusteringUtils

H

hashCode() - Method in class net.bmahe.genetics4j.samples.TSPLIBProblem
hausDorffFitnessSharing - Static variable in class net.bmahe.genetics4j.samples.clustering.FitnessSharingUtils

I

IOUtils - Class in net.bmahe.genetics4j.samples.clustering
IOUtils() - Constructor for class net.bmahe.genetics4j.samples.clustering.IOUtils

L

loadClusters(String) - Static method in class net.bmahe.genetics4j.samples.clustering.IOUtils
loadDataPoints(String) - Static method in class net.bmahe.genetics4j.samples.clustering.IOUtils
LocationWrapper - Class in net.bmahe.genetics4j.samples.clustering
LocationWrapper(double[]) - Constructor for class net.bmahe.genetics4j.samples.clustering.LocationWrapper
logger - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
logger - Static variable in class net.bmahe.genetics4j.samples.clustering.IOUtils
logger - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
logger - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.ClusteringUtils
logger - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
logger - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.MooCPU
logger - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.MooGPU
logger - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.SingleObjectiveMethod
logger - Static variable in class net.bmahe.genetics4j.samples.neat.Main
logger - Static variable in class net.bmahe.genetics4j.samples.QuickStart
logger - Static variable in class net.bmahe.genetics4j.samples.SimpleTest
logger - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
logger - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
logger - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithEnforcedMaxDepth
logger - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
logger - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
logger - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
logger - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod
LONG_PARAM_BASE_DIR_OUTPUT - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_COMBINATION_ARITHMETIC - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_COMBINATION_CROSSOVER - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_CREEP_MUTATION_MEAN - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_CREEP_MUTATION_RATE - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_CREEP_MUTATION_STD_DEV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.neat.Main
LONG_PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
LONG_PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
LONG_PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
LONG_PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
LONG_PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
LONG_PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod
LONG_PARAM_DEST_CSV_WITH_SHARING - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
LONG_PARAM_DEST_CSV_WITHOUT_SHARING - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
LONG_PARAM_FILENAME_BEST_NETWORK - Static variable in class net.bmahe.genetics4j.samples.neat.Main
LONG_PARAM_FIXED_TERMINATION - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_NUM_CLUSTERS - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_NUMBER_TOURNAMENTS - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_OUTPUT_CSV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_OUTPUT_WITH_SSE_CSV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
LONG_PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.neat.Main
LONG_PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
LONG_PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
LONG_PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
LONG_PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
LONG_PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
LONG_PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod
LONG_PARAM_RANDOM_MUTATION_RATE - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_SOURCE_CUSTERS_CSV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
LONG_PARAM_SOURCE_DATA_CSV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering

M

main(String[]) - Static method in class net.bmahe.genetics4j.samples.clustering.Clustering
main(String[]) - Static method in class net.bmahe.genetics4j.samples.FitnessSharingExample
main(String[]) - Static method in class net.bmahe.genetics4j.samples.mixturemodel.Main
main(String[]) - Static method in class net.bmahe.genetics4j.samples.neat.Main
main(String[]) - Static method in class net.bmahe.genetics4j.samples.QuickStart
main(String[]) - Static method in class net.bmahe.genetics4j.samples.SimpleTest
main(String[]) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
main(String[]) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
main(String[]) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithEnforcedMaxDepth
main(String[]) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
main(String[]) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
main(String[]) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
main(String[]) - Static method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod
main(String[]) - Static method in class net.bmahe.genetics4j.samples.TSVExample
Main - Class in net.bmahe.genetics4j.samples.mixturemodel
Main - Class in net.bmahe.genetics4j.samples.neat
Main() - Constructor for class net.bmahe.genetics4j.samples.mixturemodel.Main
Main() - Constructor for class net.bmahe.genetics4j.samples.neat.Main
MAX_GENERATIONS - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
MAX_MEAN - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
MAX_NUM_DISTRIBUTIONS - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
MAX_STD_DEV - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
maxGenerations - Variable in class net.bmahe.genetics4j.samples.mixturemodel.MooCPU
maxGenerations - Variable in class net.bmahe.genetics4j.samples.mixturemodel.MooGPU
maxGenerations - Variable in class net.bmahe.genetics4j.samples.mixturemodel.SingleObjectiveMethod
MIN_MEAN - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
MIN_NUM_DISTRIBUTIONS - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
MIN_STD_DEV - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main
MooCPU - Class in net.bmahe.genetics4j.samples.mixturemodel
MooCPU(int, Comparator<Genotype>, String, int) - Constructor for class net.bmahe.genetics4j.samples.mixturemodel.MooCPU
MooGPU - Class in net.bmahe.genetics4j.samples.mixturemodel
MooGPU(int, Comparator<Genotype>, String, int) - Constructor for class net.bmahe.genetics4j.samples.mixturemodel.MooGPU

N

net.bmahe.genetics4j.samples - package net.bmahe.genetics4j.samples
net.bmahe.genetics4j.samples.clustering - package net.bmahe.genetics4j.samples.clustering
net.bmahe.genetics4j.samples.mixturemodel - package net.bmahe.genetics4j.samples.mixturemodel
net.bmahe.genetics4j.samples.neat - package net.bmahe.genetics4j.samples.neat
net.bmahe.genetics4j.samples.symbolicregression - package net.bmahe.genetics4j.samples.symbolicregression
NUM_POINTS_PER_DISTRIBUTION - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main

O

OPT_BASE_DIR - Static variable in class net.bmahe.genetics4j.samples.mixturemodel.Main

P

PARAM_BASE_DIR_OUTPUT - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_COMBINATION_ARITHMETIC - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_COMBINATION_CROSSOVER - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_CREEP_MUTATION_MEAN - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_CREEP_MUTATION_RATE - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_CREEP_MUTATION_STD_DEV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.neat.Main
PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
PARAM_DEST_CSV - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod
PARAM_DEST_CSV_WITH_SHARING - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
PARAM_DEST_CSV_WITHOUT_SHARING - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
PARAM_FILENAME_BEST_NETWORK - Static variable in class net.bmahe.genetics4j.samples.neat.Main
PARAM_FIXED_TERMINATION - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_NUM_CLUSTERS - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_NUMBER_TOURNAMENTS - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_OUTPUT_CSV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_OUTPUT_WITH_SSE_CSV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.FitnessSharingExample
PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.neat.Main
PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
PARAM_POPULATION_SIZE - Static variable in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod
PARAM_RANDOM_MUTATION_RATE - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_SOURCE_CLUSTERS_CSV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
PARAM_SOURCE_DATA_CSV - Static variable in class net.bmahe.genetics4j.samples.clustering.Clustering
parse(String) - Method in class net.bmahe.genetics4j.samples.TSPLIBParser
persistClusters(double[][], String) - Static method in class net.bmahe.genetics4j.samples.clustering.IOUtils
persistClusters(double[], double[], int[], String) - Static method in class net.bmahe.genetics4j.samples.mixturemodel.ClusteringUtils
persistClusters(float[], float[], int[], String) - Static method in class net.bmahe.genetics4j.samples.mixturemodel.ClusteringUtils
persistDataPoints(double[][], int[], String) - Static method in class net.bmahe.genetics4j.samples.clustering.IOUtils
persistDataPoints(double[][], String) - Static method in class net.bmahe.genetics4j.samples.clustering.IOUtils
PhenotypeUtils - Class in net.bmahe.genetics4j.samples.clustering
PhenotypeUtils() - Constructor for class net.bmahe.genetics4j.samples.clustering.PhenotypeUtils
points - Variable in class net.bmahe.genetics4j.samples.clustering.LocationWrapper
Position - Class in net.bmahe.genetics4j.samples
Position(double, double) - Constructor for class net.bmahe.genetics4j.samples.Position

Q

QuickStart - Class in net.bmahe.genetics4j.samples
QuickStart() - Constructor for class net.bmahe.genetics4j.samples.QuickStart

R

run() - Method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithEnforcedMaxDepth
run(int, double[][], float[], float[], String, Collection<Genotype>) - Method in class net.bmahe.genetics4j.samples.mixturemodel.MooCPU
run(int, double[][], float[], float[], String, Collection<Genotype>) - Method in class net.bmahe.genetics4j.samples.mixturemodel.SingleObjectiveMethod
run(int, int, double[][], float[][], float[], float[], String, Collection<Genotype>, EvolutionResult<FitnessVector<Float>>) - Method in class net.bmahe.genetics4j.samples.mixturemodel.MooGPU
run(String, int) - Method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
run(String, int) - Method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
run(String, int) - Method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
run(String, int) - Method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
run(String, int) - Method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
run(String, int) - Method in class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod

S

SimpleTest - Class in net.bmahe.genetics4j.samples
SimpleTest() - Constructor for class net.bmahe.genetics4j.samples.SimpleTest
SingleObjectiveMethod - Class in net.bmahe.genetics4j.samples.mixturemodel
SingleObjectiveMethod(int, String, int) - Constructor for class net.bmahe.genetics4j.samples.mixturemodel.SingleObjectiveMethod
SymbolicRegressionUtils - Class in net.bmahe.genetics4j.samples.symbolicregression
SymbolicRegressionUtils() - Constructor for class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionUtils
SymbolicRegressionWithConstantParsimonyPressure - Class in net.bmahe.genetics4j.samples.symbolicregression
SymbolicRegressionWithConstantParsimonyPressure() - Constructor for class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithConstantParsimonyPressure
SymbolicRegressionWithDoubleTournament - Class in net.bmahe.genetics4j.samples.symbolicregression
SymbolicRegressionWithDoubleTournament() - Constructor for class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithDoubleTournament
SymbolicRegressionWithEnforcedMaxDepth - Class in net.bmahe.genetics4j.samples.symbolicregression
SymbolicRegressionWithEnforcedMaxDepth() - Constructor for class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithEnforcedMaxDepth
SymbolicRegressionWithMOO - Class in net.bmahe.genetics4j.samples.symbolicregression
SymbolicRegressionWithMOO() - Constructor for class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOO
SymbolicRegressionWithMOOSPEA2 - Class in net.bmahe.genetics4j.samples.symbolicregression
SymbolicRegressionWithMOOSPEA2() - Constructor for class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithMOOSPEA2
SymbolicRegressionWithProportionalTournament - Class in net.bmahe.genetics4j.samples.symbolicregression
SymbolicRegressionWithProportionalTournament() - Constructor for class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithProportionalTournament
SymbolicRegressionWithTarpeianMethod - Class in net.bmahe.genetics4j.samples.symbolicregression
SymbolicRegressionWithTarpeianMethod() - Constructor for class net.bmahe.genetics4j.samples.symbolicregression.SymbolicRegressionWithTarpeianMethod

T

toGenotype(int, MixtureMultivariateNormalDistribution) - Static method in class net.bmahe.genetics4j.samples.mixturemodel.Main
toPhenotype(Genotype) - Static method in class net.bmahe.genetics4j.samples.clustering.PhenotypeUtils
toPhenotype(Genotype) - Static method in class net.bmahe.genetics4j.samples.FitnessSharingExample
toString() - Method in class net.bmahe.genetics4j.samples.TSPLIBProblem
TSPLIBParser - Class in net.bmahe.genetics4j.samples
TSPLIBParser() - Constructor for class net.bmahe.genetics4j.samples.TSPLIBParser
TSPLIBProblem - Class in net.bmahe.genetics4j.samples
TSPLIBProblem(Map<String, String>, List<Position>) - Constructor for class net.bmahe.genetics4j.samples.TSPLIBProblem
TSVExample - Class in net.bmahe.genetics4j.samples
TSVExample() - Constructor for class net.bmahe.genetics4j.samples.TSVExample

W

writeCSVReferenceValue(String, int, Number) - Static method in class net.bmahe.genetics4j.samples.mixturemodel.ClusteringUtils

X

x - Variable in class net.bmahe.genetics4j.samples.Position

Y

y - Variable in class net.bmahe.genetics4j.samples.Position

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