Index (Neural Networks through Augmenting Topologies (NEAT) 5.4-SNAPSHOT API)

A B C D E F G H I L M N O P R S T V W
All Classes and Interfaces|All Packages|Constant Field Values

A

AbstractNeatChromosomeConnectionMutationHandler<T> - Class in net.bmahe.genetics4j.neat.mutation.chromosome
AbstractNeatChromosomeConnectionMutationHandler(Class, RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.AbstractNeatChromosomeConnectionMutationHandler
activationFunction - Variable in class net.bmahe.genetics4j.neat.FeedForwardNetwork
activationFunction - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
Activations - Class in net.bmahe.genetics4j.neat: Utility class providing common activation functions for NEAT (NeuroEvolution of Augmenting Topologies) neural networks.
Activations() - Constructor for class net.bmahe.genetics4j.neat.Activations
addAllMembers(Collection) - Method in class net.bmahe.genetics4j.neat.Species: Adds multiple individuals as members of this species.
addAncestor(Individual) - Method in class net.bmahe.genetics4j.neat.Species: Adds an individual as an ancestor of this species.
AddConnection - Class in net.bmahe.genetics4j.neat.spec.mutation
AddConnection() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.AddConnection
AddConnectionPolicyHandler<T> - Class in net.bmahe.genetics4j.neat.mutation: Mutation policy handler for NEAT (NeuroEvolution of Augmenting Topologies) add-connection mutations.
AddConnectionPolicyHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.AddConnectionPolicyHandler: Constructs a new add-connection policy handler with the specified random generator.
addMember(Individual) - Method in class net.bmahe.genetics4j.neat.Species: Adds an individual as a member of this species.
AddNode - Class in net.bmahe.genetics4j.neat.spec.mutation
AddNode() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.AddNode
AddNodePolicyHandler<T> - Class in net.bmahe.genetics4j.neat.mutation: Mutation policy handler for NEAT (NeuroEvolution of Augmenting Topologies) add-node mutations.
AddNodePolicyHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.AddNodePolicyHandler: Constructs a new add-node policy handler with the specified random generator.
allNodeIndices - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
allocatedNodeIds - Variable in class net.bmahe.genetics4j.neat.NodeIdManager
allocateNodeId() - Method in class net.bmahe.genetics4j.neat.NodeIdManager
ancestors - Variable in class net.bmahe.genetics4j.neat.Species

B

backwardConnections - Variable in class net.bmahe.genetics4j.neat.FeedForwardNetwork
backwardConnections - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
build() - Method in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder: Builds a new Connection.
build() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder: Builds a new NeatCombination.
build() - Static method in interface net.bmahe.genetics4j.neat.spec.combination.NeatCombination: Creates a NEAT combination policy with default settings.
build() - Static method in interface net.bmahe.genetics4j.neat.spec.combination.parentcompare.FitnessComparison
build() - Static method in interface net.bmahe.genetics4j.neat.spec.combination.parentcompare.FitnessThenSizeComparison
build() - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessComparison.Builder: Builds a new FitnessComparison.
build() - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessThenSizeComparison.Builder: Builds a new FitnessThenSizeComparison.
build() - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder: Builds a new NeatChromosomeSpec.
build() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection.Builder: Builds a new AddConnection.
build() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode.Builder: Builds a new AddNode.
build() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection.Builder: Builds a new DeleteConnection.
build() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode.Builder: Builds a new DeleteNode.
build() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder: Builds a new NeatConnectionWeight.
build() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation.Builder: Builds a new SwitchStateMutation.
build() - Static method in class net.bmahe.genetics4j.neat.spec.mutation.NeatConnectionWeight
build() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder: Builds a new NeatSelection.
builder() - Static method in interface net.bmahe.genetics4j.neat.Connection
builder() - Static method in interface net.bmahe.genetics4j.neat.spec.combination.NeatCombination
builder() - Static method in interface net.bmahe.genetics4j.neat.spec.combination.parentcompare.FitnessComparison
builder() - Static method in interface net.bmahe.genetics4j.neat.spec.combination.parentcompare.FitnessThenSizeComparison
builder() - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection: Creates a builder for AddConnection.
builder() - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode: Creates a builder for AddNode.
builder() - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection: Creates a builder for DeleteConnection.
builder() - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode: Creates a builder for DeleteNode.
builder() - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation: Creates a builder for SwitchStateMutation.
builder() - Static method in class net.bmahe.genetics4j.neat.spec.mutation.NeatConnectionWeight
builder() - Static method in class net.bmahe.genetics4j.neat.spec.selection.NeatSelection
Builder() - Constructor for class net.bmahe.genetics4j.neat.Connection.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.ImmutableConnection.Builder: Creates a builder for Connection instances.
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder: Creates a builder for NeatCombination instances.
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.combination.NeatCombination.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.combination.parentcompare.FitnessComparison.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.combination.parentcompare.FitnessThenSizeComparison.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessComparison.Builder: Creates a builder for FitnessComparison instances.
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessThenSizeComparison.Builder: Creates a builder for FitnessThenSizeComparison instances.
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder: Creates a builder for NeatChromosomeSpec instances.
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder: Creates a builder for NeatConnectionWeight instances.
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.NeatConnectionWeight.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec.Builder
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder: Creates a builder for NeatSelection instances.
Builder() - Constructor for class net.bmahe.genetics4j.neat.spec.selection.NeatSelection.Builder
buildOutputValues(Map) - Method in class net.bmahe.genetics4j.neat.RecurrentNetwork

C

canHandle(ChromosomeCombinatorResolver, CombinationPolicy, ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.combination.NeatCombinationHandler: Determines whether this handler can process the given combination policy and chromosome specification.
canHandle(MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.AddConnectionPolicyHandler: Determines whether this handler can process the given mutation policy.
canHandle(MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.AddNodePolicyHandler: Determines whether this handler can process the given mutation policy.
canHandle(MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.DeleteConnectionPolicyHandler
canHandle(MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.DeleteNodePolicyHandler
canHandle(MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.NeatConnectionWeightPolicyHandler: Determines whether this handler can process the given mutation policy.
canHandle(MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.NeatSwitchStatePolicyHandler
canHandle(ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.chromosomes.factory.NeatConnectedChromosomeFactory: Determines whether this factory can generate chromosomes for the given specification.
canHandle(ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.chromosomes.factory.NeatEmptyChromosomeFactory
canHandle(MutationPolicy, ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.AbstractNeatChromosomeConnectionMutationHandler
canHandle(MutationPolicy, ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddConnection: Determines whether this handler can process the given mutation policy and chromosome specification.
canHandle(MutationPolicy, ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeConnectionWeightMutationHandler
canHandle(MutationPolicy, ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteConnection
canHandle(MutationPolicy, ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteNodeMutationHandler
canHandle(SelectionPolicy) - Method in class net.bmahe.genetics4j.neat.selection.NeatSelectionPolicyHandler: Determines whether this handler can process the given selection policy.
canHandle(ParentComparisonPolicy) - Method in class net.bmahe.genetics4j.neat.combination.parentcompare.FitnessComparisonHandler
canHandle(ParentComparisonPolicy) - Method in class net.bmahe.genetics4j.neat.combination.parentcompare.FitnessThenSizeComparisonHandler
canHandle(ParentComparisonPolicy) - Method in interface net.bmahe.genetics4j.neat.combination.parentcompare.ParentComparisonHandler: Determines whether this handler can process the given parent comparison policy.
check() - Method in interface net.bmahe.genetics4j.neat.Connection
check() - Method in interface net.bmahe.genetics4j.neat.spec.combination.NeatCombination
check() - Method in class net.bmahe.genetics4j.neat.spec.mutation.AddConnection
check() - Method in class net.bmahe.genetics4j.neat.spec.mutation.AddNode
check() - Method in class net.bmahe.genetics4j.neat.spec.mutation.DeleteConnection
check() - Method in class net.bmahe.genetics4j.neat.spec.mutation.DeleteNode
check() - Method in class net.bmahe.genetics4j.neat.spec.mutation.NeatConnectionWeight
check() - Method in class net.bmahe.genetics4j.neat.spec.mutation.SwitchStateMutation
check() - Method in class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec
check() - Method in class net.bmahe.genetics4j.neat.spec.selection.NeatSelection
chosen - Variable in record class net.bmahe.genetics4j.neat.combination.parentcompare.ChosenOtherChromosome: The field for the chosen record component.
chosen() - Method in record class net.bmahe.genetics4j.neat.combination.parentcompare.ChosenOtherChromosome: Returns the value of the chosen record component.
ChosenOtherChromosome - Record Class in net.bmahe.genetics4j.neat.combination.parentcompare: Represents the result of parent comparison during NEAT genetic crossover.
ChosenOtherChromosome(NeatChromosome, NeatChromosome) - Constructor for record class net.bmahe.genetics4j.neat.combination.parentcompare.ChosenOtherChromosome: Creates an instance of a ChosenOtherChromosome record class.
combine(AbstractEAConfiguration, Chromosome, T, Chromosome, T) - Method in class net.bmahe.genetics4j.neat.combination.NeatChromosomeCombinator: Performs genetic crossover between two NEAT chromosomes to produce offspring.
compare(ParentComparisonPolicy, NeatChromosome, NeatChromosome, int) - Method in class net.bmahe.genetics4j.neat.combination.parentcompare.FitnessComparisonHandler
compare(ParentComparisonPolicy, NeatChromosome, NeatChromosome, int) - Method in class net.bmahe.genetics4j.neat.combination.parentcompare.FitnessThenSizeComparisonHandler
compare(ParentComparisonPolicy, NeatChromosome, NeatChromosome, int) - Method in interface net.bmahe.genetics4j.neat.combination.parentcompare.ParentComparisonHandler: Compares two parent chromosomes and determines which should be chosen for preferred inheritance.
compatibilityDistance(List, List, float, float, float) - Static method in class net.bmahe.genetics4j.neat.NeatUtils
compatibilityDistance(Genotype, Genotype, int, float, float, float) - Static method in class net.bmahe.genetics4j.neat.NeatUtils
compute(Map) - Method in class net.bmahe.genetics4j.neat.FeedForwardNetwork: Computes the network output for the given input values.
compute(Map) - Method in class net.bmahe.genetics4j.neat.RecurrentNetwork
computeBackwardConnections(List) - Static method in class net.bmahe.genetics4j.neat.NeatUtils
computeBackwardLinks(List) - Static method in class net.bmahe.genetics4j.neat.NeatUtils
computeDeadNodes(List, Map, Map, Set) - Static method in class net.bmahe.genetics4j.neat.NeatUtils: Working backward from the output nodes, we identify the nodes that did not get visited as dead nodes
computeForwardLinks(List) - Static method in class net.bmahe.genetics4j.neat.NeatUtils
computeNewId() - Method in class net.bmahe.genetics4j.neat.SpeciesIdGenerator: Generates and returns a new unique species ID.
computeNewId(int, int) - Method in class net.bmahe.genetics4j.neat.InnovationManager: Computes or retrieves the innovation number for a connection between two nodes.
Connection - Interface in net.bmahe.genetics4j.neat: Represents a neural network connection in the NEAT (NeuroEvolution of Augmenting Topologies) algorithm.
Connection.Builder - Class in net.bmahe.genetics4j.neat
ConnectionPair - Record Class in net.bmahe.genetics4j.neat: Represents a pair of node indices defining a potential connection in NEAT neural networks.
ConnectionPair(int, int) - Constructor for record class net.bmahe.genetics4j.neat.ConnectionPair: Creates an instance of a ConnectionPair record class.
connections - Variable in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome
connections - Variable in class net.bmahe.genetics4j.neat.FeedForwardNetwork
connections - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
contiguous(int, int) - Static method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Creates a traditional contiguous layout with the remainder of the non-negative int domain reserved for hidden nodes.
contiguous(int, int, long, long) - Static method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Creates a contiguous external layout with an explicit hidden-node range.
ContiguousNeatNodeLayout - Class in net.bmahe.genetics4j.neat.spec: Node layout using the traditional contiguous NEAT external IDs.
ContiguousNeatNodeLayout(int, int, long, long) - Constructor for class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout: Creates a contiguous node layout.
convergenceThreshold - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
copyOf(Connection) - Static method in interface net.bmahe.genetics4j.neat.Connection: Creates a copy of the specified connection.
copyOf(Connection) - Static method in class net.bmahe.genetics4j.neat.ImmutableConnection: Creates an immutable copy of a Connection value.
copyOf(NeatCombination) - Static method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: Creates an immutable copy of a NeatCombination value.
copyOf(FitnessComparison) - Static method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessComparison: Creates an immutable copy of a FitnessComparison value.
copyOf(FitnessThenSizeComparison) - Static method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessThenSizeComparison: Creates an immutable copy of a FitnessThenSizeComparison value.
copyOf(AddConnection) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection: Creates an immutable copy of a AddConnection value.
copyOf(AddNode) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode: Creates an immutable copy of a AddNode value.
copyOf(DeleteConnection) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection: Creates an immutable copy of a DeleteConnection value.
copyOf(DeleteNode) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode: Creates an immutable copy of a DeleteNode value.
copyOf(NeatConnectionWeight) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight: Creates an immutable copy of a NeatConnectionWeight value.
copyOf(SwitchStateMutation) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation: Creates an immutable copy of a SwitchStateMutation value.
copyOf(NeatChromosomeSpec) - Static method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Creates an immutable copy of a NeatChromosomeSpec value.
copyOf(NeatSelection) - Static method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Creates an immutable copy of a NeatSelection value.
createMutator(AbstractEAExecutionContext, AbstractEAConfiguration, MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.AddConnectionPolicyHandler: Creates a concrete mutator for add-connection mutations.
createMutator(AbstractEAExecutionContext, AbstractEAConfiguration, MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.AddNodePolicyHandler: Creates a concrete mutator for add-node mutations.
createMutator(AbstractEAExecutionContext, AbstractEAConfiguration, MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.DeleteConnectionPolicyHandler
createMutator(AbstractEAExecutionContext, AbstractEAConfiguration, MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.DeleteNodePolicyHandler
createMutator(AbstractEAExecutionContext, AbstractEAConfiguration, MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.NeatConnectionWeightPolicyHandler: Creates a concrete mutator for connection weight mutations.
createMutator(AbstractEAExecutionContext, AbstractEAConfiguration, MutationPolicyHandlerResolver, MutationPolicy) - Method in class net.bmahe.genetics4j.neat.mutation.NeatSwitchStatePolicyHandler
currentId - Variable in class net.bmahe.genetics4j.neat.InnovationManager
currentId - Variable in class net.bmahe.genetics4j.neat.SpeciesIdGenerator

D

DEFAULT_CONVERGENCE_THRESHOLD - Static variable in class net.bmahe.genetics4j.neat.RecurrentNetwork: Default convergence threshold applied to node deltas between iterations.
DEFAULT_INHERITANCE_THRESHOLD - Static variable in interface net.bmahe.genetics4j.neat.spec.combination.NeatCombination
DEFAULT_INITIAL_ID - Static variable in class net.bmahe.genetics4j.neat.InnovationManager
DEFAULT_INITIAL_ID - Static variable in class net.bmahe.genetics4j.neat.SpeciesIdGenerator
DEFAULT_INITIAL_STATE_VALUE - Static variable in class net.bmahe.genetics4j.neat.RecurrentNetwork: Default value assigned to non-input nodes before the first iteration.
DEFAULT_MAX_ITERATIONS - Static variable in class net.bmahe.genetics4j.neat.RecurrentNetwork: Default maximum number of recurrent iterations.
DEFAULT_REENABLE_GENE_INHERITANCE_THRESHOLD - Static variable in interface net.bmahe.genetics4j.neat.spec.combination.NeatCombination
DeleteConnection - Class in net.bmahe.genetics4j.neat.spec.mutation
DeleteConnection() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.DeleteConnection
DeleteConnectionPolicyHandler<T> - Class in net.bmahe.genetics4j.neat.mutation
DeleteConnectionPolicyHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.DeleteConnectionPolicyHandler
DeleteNode - Class in net.bmahe.genetics4j.neat.spec.mutation
DeleteNode() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.DeleteNode
DeleteNodePolicyHandler<T> - Class in net.bmahe.genetics4j.neat.mutation
DeleteNodePolicyHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.DeleteNodePolicyHandler

E

eliminateLowestPerformers(AbstractEAConfiguration, List) - Method in class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl: Eliminates the lowest-performing individuals from all species while maintaining species diversity.
enrichWithNeat(ImmutableEAExecutionContext.Builder) - Static method in class net.bmahe.genetics4j.neat.NeatEAExecutionContexts: Enriches an existing EA execution context builder with standard NEAT components.
enrichWithNeat(ImmutableEAExecutionContext.Builder, InnovationManager, SpeciesIdGenerator, ChromosomeFactoryProvider) - Static method in class net.bmahe.genetics4j.neat.NeatEAExecutionContexts: Enriches an EA execution context builder with custom NEAT components.
enrichWithNeat(ImmutableEAExecutionContext.Builder, InnovationManager, SpeciesIdGenerator, NodeIdManagerRegistry, ChromosomeFactoryProvider) - Static method in class net.bmahe.genetics4j.neat.NeatEAExecutionContexts
equals(Object) - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome
equals(Object) - Method in record class net.bmahe.genetics4j.neat.combination.parentcompare.ChosenOtherChromosome: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class net.bmahe.genetics4j.neat.ConnectionPair: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: This instance is equal to all instances of ImmutableConnection that have equal attribute values.
equals(Object) - Method in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: This instance is equal to all instances of ImmutableNeatCombination that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessComparison: This instance is equal to all instances of ImmutableFitnessComparison that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessThenSizeComparison: This instance is equal to all instances of ImmutableFitnessThenSizeComparison that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: This instance is equal to all instances of ImmutableNeatChromosomeSpec that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection: This instance is equal to all instances of ImmutableAddConnection that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode: This instance is equal to all instances of ImmutableAddNode that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection: This instance is equal to all instances of ImmutableDeleteConnection that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode: This instance is equal to all instances of ImmutableDeleteNode that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight: This instance is equal to all instances of ImmutableNeatConnectionWeight that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation: This instance is equal to all instances of ImmutableSwitchStateMutation that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: This instance is equal to all instances of ImmutableNeatSelection that have equal attribute values.
equals(Object) - Method in class net.bmahe.genetics4j.neat.Species
equalsByValue(ImmutableConnection) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection
equalsByValue(ImmutableNeatCombination) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
equalsByValue(ImmutableFitnessComparison) - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessComparison
equalsByValue(ImmutableFitnessThenSizeComparison) - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessThenSizeComparison
equalsByValue(ImmutableNeatChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec
equalsByValue(ImmutableAddConnection) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection
equalsByValue(ImmutableAddNode) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode
equalsByValue(ImmutableDeleteConnection) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection
equalsByValue(ImmutableDeleteNode) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode
equalsByValue(ImmutableNeatConnectionWeight) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
equalsByValue(ImmutableSwitchStateMutation) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation
equalsByValue(ImmutableNeatSelection) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
evaluatedNodeIndices - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
explicit(List, List, long, long) - Static method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Creates a layout with explicitly ordered external IDs and a dedicated hidden-node range.
ExplicitNeatNodeLayout - Class in net.bmahe.genetics4j.neat.spec: Node layout with explicitly declared, ordered input and output IDs.
ExplicitNeatNodeLayout(List, List, long, long) - Constructor for class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout: Creates an explicit node layout.

F

FeedForwardNetwork - Class in net.bmahe.genetics4j.neat: Implements a feed-forward neural network for evaluating NEAT (NeuroEvolution of Augmenting Topologies) chromosomes.
FeedForwardNetwork(Set, Set, List, Function) - Constructor for class net.bmahe.genetics4j.neat.FeedForwardNetwork: Constructs a new feed-forward network with the specified topology and activation function.
find(ParentComparisonPolicy) - Method in class net.bmahe.genetics4j.neat.combination.parentcompare.ParentComparisonHandlerLocator
FitnessComparison - Interface in net.bmahe.genetics4j.neat.spec.combination.parentcompare: Comparing parents based on their fitness
FitnessComparison.Builder - Class in net.bmahe.genetics4j.neat.spec.combination.parentcompare
FitnessComparisonHandler - Class in net.bmahe.genetics4j.neat.combination.parentcompare
FitnessComparisonHandler() - Constructor for class net.bmahe.genetics4j.neat.combination.parentcompare.FitnessComparisonHandler
FitnessThenSizeComparison - Interface in net.bmahe.genetics4j.neat.spec.combination.parentcompare: Comparing parents based on fitness first and then their size in case of equal fitness.
FitnessThenSizeComparison.Builder - Class in net.bmahe.genetics4j.neat.spec.combination.parentcompare
FitnessThenSizeComparisonHandler - Class in net.bmahe.genetics4j.neat.combination.parentcompare
FitnessThenSizeComparisonHandler() - Constructor for class net.bmahe.genetics4j.neat.combination.parentcompare.FitnessThenSizeComparisonHandler
format(NeatChromosome, Map) - Method in class net.bmahe.genetics4j.neat.util.GraphvizFormatter
formatInitCycleMessage() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
formatInitCycleMessage() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
formatInitCycleMessage() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
formatRequiredAttributesMessage() - Method in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
formatRequiredAttributesMessage() - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder
formatRequiredAttributesMessage() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection.Builder
formatRequiredAttributesMessage() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode.Builder
formatRequiredAttributesMessage() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection.Builder
formatRequiredAttributesMessage() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode.Builder
formatRequiredAttributesMessage() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation.Builder
formatRequiredAttributesMessage() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
from - Variable in record class net.bmahe.genetics4j.neat.ConnectionPair: The field for the from record component.
from() - Method in record class net.bmahe.genetics4j.neat.ConnectionPair: Returns the value of the from record component.
from(Connection) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder: Fill a builder with attribute values from the provided Connection instance.
from(NeatCombination) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder: Fill a builder with attribute values from the provided NeatCombination instance.
from(FitnessComparison) - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessComparison.Builder: Fill a builder with attribute values from the provided FitnessComparison instance.
from(FitnessThenSizeComparison) - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessThenSizeComparison.Builder: Fill a builder with attribute values from the provided FitnessThenSizeComparison instance.
from(AddConnection) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection.Builder: Fill a builder with attribute values from the provided AddConnection instance.
from(AddNode) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode.Builder: Fill a builder with attribute values from the provided AddNode instance.
from(DeleteConnection) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection.Builder: Fill a builder with attribute values from the provided DeleteConnection instance.
from(DeleteNode) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode.Builder: Fill a builder with attribute values from the provided DeleteNode instance.
from(NeatConnectionWeight) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder: Fill a builder with attribute values from the provided NeatConnectionWeight instance.
from(SwitchStateMutation) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation.Builder: Fill a builder with attribute values from the provided SwitchStateMutation instance.
from(NeatChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder: Fill a builder with attribute values from the provided NeatChromosomeSpec instance.
from(NeatSelection) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder: Fill a builder with attribute values from the provided NeatSelection instance.
fromNodeIndex - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
fromNodeIndex - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection
fromNodeIndex() - Method in interface net.bmahe.genetics4j.neat.Connection: Returns the index of the source node for this connection.
fromNodeIndex() - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Returns the index of the source node for this connection.
fromNodeIndex(int) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder: Initializes the value for the fromNodeIndex attribute.

G

generate(ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.chromosomes.factory.NeatConnectedChromosomeFactory: Generates a fully-connected NEAT chromosome based on the given specification.
generate(ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.chromosomes.factory.NeatEmptyChromosomeFactory
getAncestors() - Method in class net.bmahe.genetics4j.neat.Species: Returns the list of ancestors for this species.
getConnections() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Returns an immutable list of all connections in this neural network.
getId() - Method in class net.bmahe.genetics4j.neat.Species: Returns the unique identifier for this species.
getInputNodeIds() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Returns input node IDs in their declared vector order.
getInputNodeIndices() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Deprecated.
use NeatChromosome.getInputNodeIds() to preserve declaration order
getMaxWeightValue() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Returns the maximum allowed connection weight value for this network.
getMembers() - Method in class net.bmahe.genetics4j.neat.Species: Returns the list of current members in this species.
getMinWeightValue() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Returns the minimum allowed connection weight value for this network.
getMutationClazz() - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.AbstractNeatChromosomeConnectionMutationHandler
getNodeLayout() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome
getNumAlleles() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Returns the total number of alleles (genetic components) in this chromosome.
getNumAncestors() - Method in class net.bmahe.genetics4j.neat.Species: Returns the number of ancestors in this species.
getNumInputs() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Returns the number of input nodes in this neural network.
getNumMembers() - Method in class net.bmahe.genetics4j.neat.Species: Returns the number of current members in this species.
getNumOutputs() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Returns the number of output nodes in this neural network.
getOutputNodeIds() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Returns output node IDs in their declared vector order.
getOutputNodeIndices() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Deprecated.
use NeatChromosome.getOutputNodeIds() to preserve declaration order
getRandomGenerator() - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.AbstractNeatChromosomeConnectionMutationHandler
GraphvizFormatter - Class in net.bmahe.genetics4j.neat.util
GraphvizFormatter() - Constructor for class net.bmahe.genetics4j.neat.util.GraphvizFormatter

H

hashCode() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome
hashCode() - Method in record class net.bmahe.genetics4j.neat.combination.parentcompare.ChosenOtherChromosome: Returns a hash code value for this object.
hashCode() - Method in record class net.bmahe.genetics4j.neat.ConnectionPair: Returns a hash code value for this object.
hashCode() - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Computes a hash code from attributes: fromNodeIndex, toNodeIndex, weight, isEnabled, innovation.
hashCode() - Method in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: Returns a hash code value for this object.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: Computes a hash code from attributes: inheritanceThresold, reenableGeneInheritanceThresold, parentComparisonPolicy.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessComparison: Returns a constant hash code value.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessThenSizeComparison: Returns a constant hash code value.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Computes a hash code from attributes: nodeLayout, minWeightValue, maxWeightValue.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection: Computes a hash code from attributes: populationMutationProbability.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode: Computes a hash code from attributes: populationMutationProbability.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection: Computes a hash code from attributes: populationMutationProbability.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode: Computes a hash code from attributes: populationMutationProbability.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight: Computes a hash code from attributes: populationMutationProbability, perturbationRatio, perturbationDistribution, newValuesDistribution.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation: Computes a hash code from attributes: populationMutationProbability.
hashCode() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Computes a hash code from attributes: perSpeciesKeepRatio, minSpeciesSize, speciesPredicate, speciesSelection.
hashCode() - Method in class net.bmahe.genetics4j.neat.Species
hiddenEnd - Variable in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: The field for the hiddenEnd record component.
hiddenEnd() - Method in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: Returns the value of the hiddenEnd record component.
hiddenNodeIdEndExclusive - Variable in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
hiddenNodeIdEndExclusive - Variable in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
hiddenNodeIdEndExclusive() - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
hiddenNodeIdEndExclusive() - Method in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
hiddenNodeIdEndExclusive() - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Returns the exclusive end of the hidden-node namespace.
hiddenNodeIdStartInclusive - Variable in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
hiddenNodeIdStartInclusive - Variable in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
hiddenNodeIdStartInclusive() - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
hiddenNodeIdStartInclusive() - Method in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
hiddenNodeIdStartInclusive() - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Returns the first ID reserved for hidden nodes.
hiddenStart - Variable in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: The field for the hiddenStart record component.
hiddenStart() - Method in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: Returns the value of the hiddenStart record component.

I

id - Variable in class net.bmahe.genetics4j.neat.Species
identity - Static variable in class net.bmahe.genetics4j.neat.Activations: Identity activation function for double values (f(x) = x).
identityFloat - Static variable in class net.bmahe.genetics4j.neat.Activations: Identity activation function for float values (f(x) = x).
ImmutableAddConnection - Class in net.bmahe.genetics4j.neat.spec.mutation: Immutable implementation of AddConnection.
ImmutableAddConnection(double) - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection
ImmutableAddConnection.Builder - Class in net.bmahe.genetics4j.neat.spec.mutation: Builds instances of type AddConnection.
ImmutableAddNode - Class in net.bmahe.genetics4j.neat.spec.mutation: Immutable implementation of AddNode.
ImmutableAddNode(double) - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode
ImmutableAddNode.Builder - Class in net.bmahe.genetics4j.neat.spec.mutation: Builds instances of type AddNode.
ImmutableConnection - Class in net.bmahe.genetics4j.neat: Immutable implementation of Connection.
ImmutableConnection(int, int, float, boolean, int) - Constructor for class net.bmahe.genetics4j.neat.ImmutableConnection
ImmutableConnection.Builder - Class in net.bmahe.genetics4j.neat: Builds instances of type Connection.
ImmutableDeleteConnection - Class in net.bmahe.genetics4j.neat.spec.mutation: Immutable implementation of DeleteConnection.
ImmutableDeleteConnection(double) - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection
ImmutableDeleteConnection.Builder - Class in net.bmahe.genetics4j.neat.spec.mutation: Builds instances of type DeleteConnection.
ImmutableDeleteNode - Class in net.bmahe.genetics4j.neat.spec.mutation: Immutable implementation of DeleteNode.
ImmutableDeleteNode(double) - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode
ImmutableDeleteNode.Builder - Class in net.bmahe.genetics4j.neat.spec.mutation: Builds instances of type DeleteNode.
ImmutableFitnessComparison - Class in net.bmahe.genetics4j.neat.spec.combination.parentcompare: Immutable implementation of FitnessComparison.
ImmutableFitnessComparison(ImmutableFitnessComparison.Builder) - Constructor for class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessComparison
ImmutableFitnessComparison.Builder - Class in net.bmahe.genetics4j.neat.spec.combination.parentcompare: Builds instances of type FitnessComparison.
ImmutableFitnessThenSizeComparison - Class in net.bmahe.genetics4j.neat.spec.combination.parentcompare: Immutable implementation of FitnessThenSizeComparison.
ImmutableFitnessThenSizeComparison(ImmutableFitnessThenSizeComparison.Builder) - Constructor for class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessThenSizeComparison
ImmutableFitnessThenSizeComparison.Builder - Class in net.bmahe.genetics4j.neat.spec.combination.parentcompare: Builds instances of type FitnessThenSizeComparison.
ImmutableNeatChromosomeSpec - Class in net.bmahe.genetics4j.neat.spec: Immutable implementation of NeatChromosomeSpec.
ImmutableNeatChromosomeSpec(ImmutableNeatChromosomeSpec, NeatNodeLayout, float, float) - Constructor for class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec
ImmutableNeatChromosomeSpec(NeatNodeLayout, float, float) - Constructor for class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec
ImmutableNeatChromosomeSpec.Builder - Class in net.bmahe.genetics4j.neat.spec: Builds instances of type NeatChromosomeSpec.
ImmutableNeatCombination - Class in net.bmahe.genetics4j.neat.spec.combination: Immutable implementation of NeatCombination.
ImmutableNeatCombination(double, double, ParentComparisonPolicy) - Constructor for class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
ImmutableNeatCombination(ImmutableNeatCombination.Builder) - Constructor for class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
ImmutableNeatCombination.Builder - Class in net.bmahe.genetics4j.neat.spec.combination: Builds instances of type NeatCombination.
ImmutableNeatCombination.InitShim - Class in net.bmahe.genetics4j.neat.spec.combination
ImmutableNeatConnectionWeight - Class in net.bmahe.genetics4j.neat.spec.mutation: Immutable implementation of NeatConnectionWeight.
ImmutableNeatConnectionWeight(double, double, Distribution, Distribution) - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
ImmutableNeatConnectionWeight(ImmutableNeatConnectionWeight.Builder) - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
ImmutableNeatConnectionWeight.Builder - Class in net.bmahe.genetics4j.neat.spec.mutation: Builds instances of type NeatConnectionWeight.
ImmutableNeatConnectionWeight.InitShim - Class in net.bmahe.genetics4j.neat.spec.mutation
ImmutableNeatSelection<T> - Class in net.bmahe.genetics4j.neat.spec.selection: Immutable implementation of NeatSelection.
ImmutableNeatSelection(float, int, BiPredicate, SelectionPolicy) - Constructor for class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
ImmutableNeatSelection(ImmutableNeatSelection.Builder) - Constructor for class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
ImmutableNeatSelection.Builder<T> - Class in net.bmahe.genetics4j.neat.spec.selection: Builds instances of type NeatSelection.
ImmutableNeatSelection.InitShim - Class in net.bmahe.genetics4j.neat.spec.selection
ImmutableSwitchStateMutation - Class in net.bmahe.genetics4j.neat.spec.mutation: Immutable implementation of SwitchStateMutation.
ImmutableSwitchStateMutation(double) - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation
ImmutableSwitchStateMutation.Builder - Class in net.bmahe.genetics4j.neat.spec.mutation: Builds instances of type SwitchStateMutation.
inheritanceThresold - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder
inheritanceThresold - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
inheritanceThresold - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
inheritanceThresold() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: Returns the inheritance threshold for biasing gene selection toward fitter parents.
inheritanceThresold() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
inheritanceThresold() - Method in interface net.bmahe.genetics4j.neat.spec.combination.NeatCombination: Returns the inheritance threshold for biasing gene selection toward fitter parents.
inheritanceThresold(double) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder: Initializes the value for the inheritanceThresold attribute.
inheritanceThresold(double) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
inheritanceThresoldBuildStage - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
inheritanceThresoldInitialize() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
inheritanceThresoldIsSet() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder
INIT_BIT_FROM_NODE_INDEX - Static variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
INIT_BIT_INNOVATION - Static variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
INIT_BIT_IS_ENABLED - Static variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
INIT_BIT_MAX_WEIGHT_VALUE - Static variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder
INIT_BIT_MIN_WEIGHT_VALUE - Static variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder
INIT_BIT_NODE_LAYOUT - Static variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder
INIT_BIT_POPULATION_MUTATION_PROBABILITY - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection.Builder
INIT_BIT_POPULATION_MUTATION_PROBABILITY - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode.Builder
INIT_BIT_POPULATION_MUTATION_PROBABILITY - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection.Builder
INIT_BIT_POPULATION_MUTATION_PROBABILITY - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode.Builder
INIT_BIT_POPULATION_MUTATION_PROBABILITY - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation.Builder
INIT_BIT_SPECIES_PREDICATE - Static variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
INIT_BIT_SPECIES_SELECTION - Static variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
INIT_BIT_TO_NODE_INDEX - Static variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
INIT_BIT_WEIGHT - Static variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
initBits - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
initBits - Variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder
initBits - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection.Builder
initBits - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode.Builder
initBits - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection.Builder
initBits - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode.Builder
initBits - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation.Builder
initBits - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
initialStateValue - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
initShim - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
initShim - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
initShim - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
InitShim() - Constructor for class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
InitShim() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
InitShim() - Constructor for class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
innovation - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
innovation - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection
innovation() - Method in interface net.bmahe.genetics4j.neat.Connection: Returns the innovation number for this connection.
innovation() - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Returns the innovation number for this connection.
innovation(int) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder: Initializes the value for the innovation attribute.
innovationCache - Variable in class net.bmahe.genetics4j.neat.InnovationManager
innovationManager - Variable in class net.bmahe.genetics4j.neat.chromosomes.factory.NeatConnectedChromosomeFactory
innovationManager - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddConnection
innovationManager - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddNodeMutationHandler
InnovationManager - Class in net.bmahe.genetics4j.neat: Manages innovation numbers for the NEAT (NeuroEvolution of Augmenting Topologies) algorithm.
InnovationManager() - Constructor for class net.bmahe.genetics4j.neat.InnovationManager: Constructs an innovation manager with the default initial innovation number (0).
InnovationManager(int) - Constructor for class net.bmahe.genetics4j.neat.InnovationManager: Constructs an innovation manager with the specified initial innovation number.
inputNodeIds - Variable in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: The field for the inputNodeIds record component.
inputNodeIds - Variable in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
inputNodeIds() - Method in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: Returns the value of the inputNodeIds record component.
inputNodeIds() - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
inputNodeIds() - Method in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
inputNodeIds() - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Returns input node IDs in external vector order.
inputNodeIndices - Variable in class net.bmahe.genetics4j.neat.FeedForwardNetwork
inputNodeIndices - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
insertInlinksCache(Map, Connection) - Method in class net.bmahe.genetics4j.neat.combination.NeatChromosomeCombinator: Adds a connection to the links cache to prevent future duplicates.
isCompatibleWith(NeatNodeLayout) - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Tests semantic compatibility with another layout.
isEnabled - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
isEnabled - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection
isEnabled() - Method in interface net.bmahe.genetics4j.neat.Connection: Returns whether this connection is enabled.
isEnabled() - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Returns whether this connection is enabled.
isEnabled(boolean) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder: Initializes the value for the isEnabled attribute.
isExternal(int) - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Tests whether an ID identifies either an input or output node.
isHidden(int) - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Tests whether an ID belongs to the reserved hidden-node range.
isInput(int) - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
isInput(int) - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Tests whether an ID identifies an input node.
isOutput(int) - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
isOutput(int) - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Tests whether an ID identifies an output node.

L

layers - Variable in class net.bmahe.genetics4j.neat.FeedForwardNetwork
LayoutKey(List, List, long, long) - Constructor for record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: Creates an instance of a LayoutKey record class.
LayoutKey(NeatNodeLayout) - Constructor for record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey
linear(double, double) - Static method in class net.bmahe.genetics4j.neat.Activations: Creates a linear activation function with specified slope and bias for double values.
linearFloat(float, float) - Static method in class net.bmahe.genetics4j.neat.Activations: Creates a linear activation function with specified slope and bias for float values.
linksCacheContainsConnection(Map, Connection) - Method in class net.bmahe.genetics4j.neat.combination.NeatChromosomeCombinator: Checks whether a connection already exists in the links cache.
logger - Static variable in class net.bmahe.genetics4j.neat.combination.NeatChromosomeCombinator
logger - Static variable in class net.bmahe.genetics4j.neat.FeedForwardNetwork
logger - Static variable in class net.bmahe.genetics4j.neat.InnovationManager
logger - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.AbstractNeatChromosomeConnectionMutationHandler
logger - Static variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddConnection
logger - Static variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeConnectionWeightMutationHandler
logger - Static variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteConnection
logger - Static variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteNodeMutationHandler
logger - Static variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
logger - Static variable in class net.bmahe.genetics4j.neat.selection.NeatSelectionPolicyHandler
logger - Static variable in class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl

M

managerFor(NeatNodeLayout) - Method in class net.bmahe.genetics4j.neat.NodeIdManagerRegistry: Returns the shared node-ID manager for a layout, creating it when first requested.
managers - Variable in class net.bmahe.genetics4j.neat.NodeIdManagerRegistry
MAX_NODE_ID_EXCLUSIVE - Static variable in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Exclusive upper bound of the non-negative int node-ID domain.
maxIterations - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
maxWeightValue - Variable in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome
maxWeightValue - Variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder
maxWeightValue - Variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec
maxWeightValue() - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Returns the maximum allowed connection weight.
maxWeightValue() - Method in class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec: Returns the maximum allowed connection weight.
maxWeightValue(float) - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder: Initializes the value for the maxWeightValue attribute.
members - Variable in class net.bmahe.genetics4j.neat.Species
minSpeciesSize - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
minSpeciesSize - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
minSpeciesSize - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
minSpeciesSize() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
minSpeciesSize() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Returns the minimum number of individuals required to maintain a species.
minSpeciesSize() - Method in class net.bmahe.genetics4j.neat.spec.selection.NeatSelection: Returns the minimum number of individuals required to maintain a species.
minSpeciesSize(int) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder: Initializes the value for the minSpeciesSize attribute.
minSpeciesSize(int) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
minSpeciesSizeBuildStage - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
minSpeciesSizeIsSet() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
minWeightValue - Variable in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome
minWeightValue - Variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder
minWeightValue - Variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec
minWeightValue() - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Returns the minimum allowed connection weight.
minWeightValue() - Method in class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec: Returns the minimum allowed connection weight.
minWeightValue(float) - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder: Initializes the value for the minWeightValue attribute.
mutate(MutationPolicy, Chromosome) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.AbstractNeatChromosomeConnectionMutationHandler
mutate(MutationPolicy, Chromosome) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddConnection: Applies add-connection mutation to a NEAT chromosome.
mutate(MutationPolicy, Chromosome) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeConnectionWeightMutationHandler
mutate(MutationPolicy, Chromosome) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteConnection
mutate(MutationPolicy, Chromosome) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteNodeMutationHandler
mutateConnection(CreepMutation, NeatChromosome, Connection, int) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeCreepMutationHandler
mutateConnection(RandomMutation, NeatChromosome, Connection, int) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeRandomMutationHandler
mutateConnection(Connection, double, Supplier, Supplier, float, float) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeConnectionWeightMutationHandler
mutateConnection(AddNode, NeatChromosome, Connection, int) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddNodeMutationHandler
mutateConnection(SwitchStateMutation, NeatChromosome, Connection, int) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeSwitchStateHandler
mutateConnection(T, NeatChromosome, Connection, int) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.AbstractNeatChromosomeConnectionMutationHandler
mutationClazz - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.AbstractNeatChromosomeConnectionMutationHandler

N

NeatChromosome - Class in net.bmahe.genetics4j.neat.chromosomes: Represents a neural network chromosome in the NEAT (NeuroEvolution of Augmenting Topologies) algorithm.
NeatChromosome(int, int, float, float, List) - Constructor for class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Convenience constructor for the traditional contiguous node layout.
NeatChromosome(NeatNodeLayout, float, float, List) - Constructor for class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome: Constructs a new NEAT chromosome with the specified network topology and parameters.
NeatChromosomeAddConnection - Class in net.bmahe.genetics4j.neat.mutation.chromosome: Chromosome mutation handler that adds new connections to NEAT (NeuroEvolution of Augmenting Topologies) neural networks.
NeatChromosomeAddConnection(RandomGenerator, InnovationManager) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddConnection: Constructs a new add-connection mutation handler with the specified components.
NeatChromosomeAddNodeMutationHandler - Class in net.bmahe.genetics4j.neat.mutation.chromosome
NeatChromosomeAddNodeMutationHandler(RandomGenerator, InnovationManager) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddNodeMutationHandler
NeatChromosomeAddNodeMutationHandler(RandomGenerator, InnovationManager, NodeIdManagerRegistry) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddNodeMutationHandler
NeatChromosomeCombinator<T> - Class in net.bmahe.genetics4j.neat.combination: Implements genetic crossover for NEAT (NeuroEvolution of Augmenting Topologies) neural network chromosomes.
NeatChromosomeCombinator(RandomGenerator, NeatCombination, ParentComparisonHandler) - Constructor for class net.bmahe.genetics4j.neat.combination.NeatChromosomeCombinator: Constructs a new NEAT chromosome combinator with the specified components.
NeatChromosomeConnectionWeightMutationHandler - Class in net.bmahe.genetics4j.neat.mutation.chromosome
NeatChromosomeConnectionWeightMutationHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeConnectionWeightMutationHandler
NeatChromosomeCreepMutationHandler - Class in net.bmahe.genetics4j.neat.mutation.chromosome
NeatChromosomeCreepMutationHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeCreepMutationHandler
NeatChromosomeDeleteConnection - Class in net.bmahe.genetics4j.neat.mutation.chromosome
NeatChromosomeDeleteConnection(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteConnection
NeatChromosomeDeleteNodeMutationHandler - Class in net.bmahe.genetics4j.neat.mutation.chromosome
NeatChromosomeDeleteNodeMutationHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteNodeMutationHandler
NeatChromosomeRandomMutationHandler - Class in net.bmahe.genetics4j.neat.mutation.chromosome
NeatChromosomeRandomMutationHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeRandomMutationHandler
NeatChromosomeSpec - Class in net.bmahe.genetics4j.neat.spec: Specification for NEAT (NeuroEvolution of Augmenting Topologies) neural network chromosomes.
NeatChromosomeSpec() - Constructor for class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec
NeatChromosomeSpec.Builder - Class in net.bmahe.genetics4j.neat.spec: Builds immutable NEAT chromosome specifications.
NeatChromosomeSwitchStateHandler - Class in net.bmahe.genetics4j.neat.mutation.chromosome
NeatChromosomeSwitchStateHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeSwitchStateHandler
neatCombination - Variable in class net.bmahe.genetics4j.neat.combination.NeatChromosomeCombinator
NeatCombination - Interface in net.bmahe.genetics4j.neat.spec.combination: Configuration policy for NEAT (NeuroEvolution of Augmenting Topologies) genetic crossover operations.
NeatCombination.Builder - Class in net.bmahe.genetics4j.neat.spec.combination
NeatCombinationHandler<T> - Class in net.bmahe.genetics4j.neat.combination: Chromosome combinator handler for NEAT (NeuroEvolution of Augmenting Topologies) genetic crossover.
NeatCombinationHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.combination.NeatCombinationHandler: Constructs a new NEAT combination handler with the specified random generator.
NeatConnectedChromosomeFactory - Class in net.bmahe.genetics4j.neat.chromosomes.factory: Factory for creating fully-connected initial NEAT (NeuroEvolution of Augmenting Topologies) chromosomes.
NeatConnectedChromosomeFactory(RandomGenerator, InnovationManager) - Constructor for class net.bmahe.genetics4j.neat.chromosomes.factory.NeatConnectedChromosomeFactory: Constructs a new connected chromosome factory with the specified components.
NeatConnectionWeight - Class in net.bmahe.genetics4j.neat.spec.mutation
NeatConnectionWeight() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.NeatConnectionWeight
NeatConnectionWeight.Builder - Class in net.bmahe.genetics4j.neat.spec.mutation
NeatConnectionWeightPolicyHandler<T> - Class in net.bmahe.genetics4j.neat.mutation: Mutation policy handler for NEAT (NeuroEvolution of Augmenting Topologies) connection weight mutations.
NeatConnectionWeightPolicyHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.NeatConnectionWeightPolicyHandler: Constructs a new connection weight policy handler with the specified random generator.
NeatEAExecutionContexts - Class in net.bmahe.genetics4j.neat: Factory class for creating NEAT (NeuroEvolution of Augmenting Topologies) execution contexts.
NeatEAExecutionContexts() - Constructor for class net.bmahe.genetics4j.neat.NeatEAExecutionContexts
NeatEmptyChromosomeFactory - Class in net.bmahe.genetics4j.neat.chromosomes.factory
NeatEmptyChromosomeFactory() - Constructor for class net.bmahe.genetics4j.neat.chromosomes.factory.NeatEmptyChromosomeFactory
NeatNodeLayout - Interface in net.bmahe.genetics4j.neat.spec: Describes the stable external node identities and hidden-node namespace of a NEAT chromosome.
NeatNodeLayoutValidation - Class in net.bmahe.genetics4j.neat.spec
NeatNodeLayoutValidation() - Constructor for class net.bmahe.genetics4j.neat.spec.NeatNodeLayoutValidation
neatPaper - Static variable in class net.bmahe.genetics4j.neat.Activations: Sigmoid activation function with steepness 4.9 as used in the original NEAT paper (double version).
neatPaperFloat - Static variable in class net.bmahe.genetics4j.neat.Activations: Sigmoid activation function with steepness 4.9 as used in the original NEAT paper (float version).
neatSelection - Variable in class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl
NeatSelection<T> - Class in net.bmahe.genetics4j.neat.spec.selection: Selection policy for NEAT (NeuroEvolution of Augmenting Topologies) species-based selection.
NeatSelection() - Constructor for class net.bmahe.genetics4j.neat.spec.selection.NeatSelection
NeatSelection.Builder<T> - Class in net.bmahe.genetics4j.neat.spec.selection
NeatSelectionPolicyHandler<T> - Class in net.bmahe.genetics4j.neat.selection: Selection policy handler for NEAT (NeuroEvolution of Augmenting Topologies) species-based selection.
NeatSelectionPolicyHandler(RandomGenerator, SpeciesIdGenerator) - Constructor for class net.bmahe.genetics4j.neat.selection.NeatSelectionPolicyHandler: Constructs a new NEAT selection policy handler with the specified components.
NeatSelectorImpl<T> - Class in net.bmahe.genetics4j.neat.selection: Concrete implementation of species-based selection for NEAT (NeuroEvolution of Augmenting Topologies) algorithm.
NeatSelectorImpl(RandomGenerator, NeatSelection, SpeciesIdGenerator, Selector) - Constructor for class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl: Constructs a new NEAT selector implementation with the specified components.
NeatSwitchStatePolicyHandler<T> - Class in net.bmahe.genetics4j.neat.mutation
NeatSwitchStatePolicyHandler(RandomGenerator) - Constructor for class net.bmahe.genetics4j.neat.mutation.NeatSwitchStatePolicyHandler
NeatUtils - Class in net.bmahe.genetics4j.neat: Utility class providing core algorithmic operations for the NEAT (NeuroEvolution of Augmenting Topologies) algorithm.
NeatUtils() - Constructor for class net.bmahe.genetics4j.neat.NeatUtils
net.bmahe.genetics4j.neat - package net.bmahe.genetics4j.neat
net.bmahe.genetics4j.neat.chromosomes - package net.bmahe.genetics4j.neat.chromosomes
net.bmahe.genetics4j.neat.chromosomes.factory - package net.bmahe.genetics4j.neat.chromosomes.factory
net.bmahe.genetics4j.neat.combination - package net.bmahe.genetics4j.neat.combination
net.bmahe.genetics4j.neat.combination.parentcompare - package net.bmahe.genetics4j.neat.combination.parentcompare
net.bmahe.genetics4j.neat.mutation - package net.bmahe.genetics4j.neat.mutation
net.bmahe.genetics4j.neat.mutation.chromosome - package net.bmahe.genetics4j.neat.mutation.chromosome
net.bmahe.genetics4j.neat.selection - package net.bmahe.genetics4j.neat.selection
net.bmahe.genetics4j.neat.spec - package net.bmahe.genetics4j.neat.spec
net.bmahe.genetics4j.neat.spec.combination - package net.bmahe.genetics4j.neat.spec.combination
net.bmahe.genetics4j.neat.spec.combination.parentcompare - package net.bmahe.genetics4j.neat.spec.combination.parentcompare
net.bmahe.genetics4j.neat.spec.mutation - package net.bmahe.genetics4j.neat.spec.mutation
net.bmahe.genetics4j.neat.spec.selection - package net.bmahe.genetics4j.neat.spec.selection
net.bmahe.genetics4j.neat.util - package net.bmahe.genetics4j.neat.util
newValuesDistribution - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder
newValuesDistribution - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
newValuesDistribution - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
newValuesDistribution() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
newValuesDistribution() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
newValuesDistribution() - Method in class net.bmahe.genetics4j.neat.spec.mutation.NeatConnectionWeight
newValuesDistribution(Distribution) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder: Initializes the value for the newValuesDistribution attribute.
newValuesDistribution(Distribution) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
newValuesDistributionBuildStage - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
nextNodeId - Variable in class net.bmahe.genetics4j.neat.NodeIdManager
nodeIdForSplit(int) - Method in class net.bmahe.genetics4j.neat.NodeIdManager: Returns the hidden-node ID associated with splitting an ancestral connection.
NodeIdManager - Class in net.bmahe.genetics4j.neat: Allocates collision-safe hidden-node IDs for one semantic node layout.
NodeIdManager(NeatNodeLayout) - Constructor for class net.bmahe.genetics4j.neat.NodeIdManager: Creates a manager for one node layout.
nodeIdManagerRegistry - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddNodeMutationHandler
NodeIdManagerRegistry - Class in net.bmahe.genetics4j.neat: Maintains one population-scoped NodeIdManager per semantic node layout.
NodeIdManagerRegistry() - Constructor for class net.bmahe.genetics4j.neat.NodeIdManagerRegistry
NodeIdManagerRegistry.LayoutKey - Record Class in net.bmahe.genetics4j.neat
nodeLayout - Variable in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome
nodeLayout - Variable in class net.bmahe.genetics4j.neat.NodeIdManager
nodeLayout - Variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder
nodeLayout - Variable in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec
nodeLayout() - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Returns the stable external node identities and hidden-node namespace for chromosomes created from this specification.
nodeLayout() - Method in class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec: Returns the stable external node identities and hidden-node namespace for chromosomes created from this specification.
nodeLayout(NeatNodeLayout) - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec.Builder: Initializes the value for the nodeLayout attribute.
nodeState - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork
numInputs - Variable in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
numInputs() - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
numInputs() - Method in class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec: Returns the number of input nodes declared by NeatChromosomeSpec.nodeLayout().
numInputs() - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout
numOutputs - Variable in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
numOutputs() - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
numOutputs() - Method in class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec: Returns the number of output nodes declared by NeatChromosomeSpec.nodeLayout().
numOutputs() - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout

O

of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.AddConnection: Construct a new immutable AddNodeMutation instance.
of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.AddNode: Construct a new immutable AddNodeMutation instance.
of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.DeleteConnection: Construct a new immutable DeleteNodeMutation instance.
of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.DeleteNode: Construct a new immutable DeleteNodeMutation instance.
of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection: Construct a new immutable AddConnection instance.
of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode: Construct a new immutable AddNode instance.
of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection: Construct a new immutable DeleteConnection instance.
of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode: Construct a new immutable DeleteNode instance.
of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation: Construct a new immutable SwitchStateMutation instance.
of(double) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.SwitchStateMutation: Construct a new immutable SwitchStateMutation instance.
of(float, BiPredicate, SelectionPolicy) - Static method in class net.bmahe.genetics4j.neat.spec.selection.NeatSelection: Creates a NEAT selection policy with custom keep ratio and specified parameters.
of(int, int, float, boolean, int) - Static method in interface net.bmahe.genetics4j.neat.Connection: Creates a new connection with the specified parameters.
of(int, int, float, boolean, int) - Static method in class net.bmahe.genetics4j.neat.ImmutableConnection: Construct a new immutable Connection instance.
of(int, int, float, float) - Static method in class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec: Creates a specification using the traditional contiguous node layout.
of(BiPredicate, SelectionPolicy) - Static method in class net.bmahe.genetics4j.neat.spec.selection.NeatSelection: Creates a NEAT selection policy with default keep ratio and specified parameters.
of(NeatNodeLayout, float, float) - Static method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Construct a new immutable NeatChromosomeSpec instance.
of(NeatNodeLayout, float, float) - Static method in class net.bmahe.genetics4j.neat.spec.NeatChromosomeSpec: Creates a specification using the supplied node layout and connection-weight bounds.
ofDefault() - Static method in class net.bmahe.genetics4j.neat.spec.selection.NeatSelection: Creates a NEAT selection policy with standard default parameters.
OPT_BIT_INHERITANCE_THRESOLD - Static variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder
OPT_BIT_MIN_SPECIES_SIZE - Static variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
OPT_BIT_PER_SPECIES_KEEP_RATIO - Static variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
OPT_BIT_PERTURBATION_RATIO - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder
OPT_BIT_POPULATION_MUTATION_PROBABILITY - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder
OPT_BIT_REENABLE_GENE_INHERITANCE_THRESOLD - Static variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder
optBits - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder
optBits - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder
optBits - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
other - Variable in record class net.bmahe.genetics4j.neat.combination.parentcompare.ChosenOtherChromosome: The field for the other record component.
other() - Method in record class net.bmahe.genetics4j.neat.combination.parentcompare.ChosenOtherChromosome: Returns the value of the other record component.
outputNodeIds - Variable in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: The field for the outputNodeIds record component.
outputNodeIds - Variable in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
outputNodeIds() - Method in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: Returns the value of the outputNodeIds record component.
outputNodeIds() - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
outputNodeIds() - Method in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
outputNodeIds() - Method in interface net.bmahe.genetics4j.neat.spec.NeatNodeLayout: Returns output node IDs in external vector order.
outputNodeIndices - Variable in class net.bmahe.genetics4j.neat.FeedForwardNetwork
outputNodeIndices - Variable in class net.bmahe.genetics4j.neat.RecurrentNetwork

P

parentComparisonHandler - Variable in class net.bmahe.genetics4j.neat.combination.NeatChromosomeCombinator
ParentComparisonHandler - Interface in net.bmahe.genetics4j.neat.combination.parentcompare: Interface for handling parent comparison strategies during NEAT genetic crossover.
parentComparisonHandlerLocator - Variable in class net.bmahe.genetics4j.neat.combination.NeatCombinationHandler
ParentComparisonHandlerLocator - Class in net.bmahe.genetics4j.neat.combination.parentcompare
ParentComparisonHandlerLocator() - Constructor for class net.bmahe.genetics4j.neat.combination.parentcompare.ParentComparisonHandlerLocator
parentComparisonHandlerServices - Variable in class net.bmahe.genetics4j.neat.combination.parentcompare.ParentComparisonHandlerLocator
parentComparisonPolicy - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder
parentComparisonPolicy - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
parentComparisonPolicy - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
parentComparisonPolicy() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
parentComparisonPolicy() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: Returns the policy used to compare parent fitness for inheritance decisions.
parentComparisonPolicy() - Method in interface net.bmahe.genetics4j.neat.spec.combination.NeatCombination: Returns the policy used to compare parent fitness for inheritance decisions.
parentComparisonPolicy(ParentComparisonPolicy) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder: Initializes the value for the parentComparisonPolicy attribute.
parentComparisonPolicy(ParentComparisonPolicy) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
ParentComparisonPolicy - Interface in net.bmahe.genetics4j.neat.spec.combination.parentcompare
parentComparisonPolicyBuildStage - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
parentComparisonPolicyInitialize() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
partitionLayersNodes(Set, Set, List) - Static method in class net.bmahe.genetics4j.neat.NeatUtils
perSpeciesKeepRatio - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
perSpeciesKeepRatio - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
perSpeciesKeepRatio - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
perSpeciesKeepRatio() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
perSpeciesKeepRatio() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Returns the proportion of each species to preserve for reproduction.
perSpeciesKeepRatio() - Method in class net.bmahe.genetics4j.neat.spec.selection.NeatSelection: Returns the proportion of each species to preserve for reproduction.
perSpeciesKeepRatio(float) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder: Initializes the value for the perSpeciesKeepRatio attribute.
perSpeciesKeepRatio(float) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
perSpeciesKeepRatioBuildStage - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.InitShim
perSpeciesKeepRatioIsSet() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
perturbateWeight(float, float, float, float) - Method in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeConnectionWeightMutationHandler
perturbationDistribution - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder
perturbationDistribution - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
perturbationDistribution - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
perturbationDistribution() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
perturbationDistribution() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
perturbationDistribution() - Method in class net.bmahe.genetics4j.neat.spec.mutation.NeatConnectionWeight
perturbationDistribution(Distribution) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder: Initializes the value for the perturbationDistribution attribute.
perturbationDistribution(Distribution) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
perturbationDistributionBuildStage - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
perturbationRatio - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder
perturbationRatio - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
perturbationRatio - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
perturbationRatio() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
perturbationRatio() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
perturbationRatio() - Method in class net.bmahe.genetics4j.neat.spec.mutation.NeatConnectionWeight
perturbationRatio(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder: Initializes the value for the perturbationRatio attribute.
perturbationRatio(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
perturbationRatioBuildStage - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
perturbationRatioIsSet() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection.Builder
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode.Builder
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection.Builder
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode.Builder
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation.Builder
populationMutationProbability - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.AddConnection
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.AddNode
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.DeleteConnection
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.DeleteNode
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.NeatConnectionWeight
populationMutationProbability() - Method in class net.bmahe.genetics4j.neat.spec.mutation.SwitchStateMutation
populationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection.Builder: Initializes the value for the populationMutationProbability attribute.
populationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode.Builder: Initializes the value for the populationMutationProbability attribute.
populationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection.Builder: Initializes the value for the populationMutationProbability attribute.
populationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode.Builder: Initializes the value for the populationMutationProbability attribute.
populationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder: Initializes the value for the populationMutationProbability attribute.
populationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
populationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation.Builder: Initializes the value for the populationMutationProbability attribute.
populationMutationProbabilityBuildStage - Variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.InitShim
populationMutationProbabilityIsSet() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight.Builder
previousSpecies - Variable in class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl

R

randomGenerator - Variable in class net.bmahe.genetics4j.neat.chromosomes.factory.NeatConnectedChromosomeFactory
randomGenerator - Variable in class net.bmahe.genetics4j.neat.combination.NeatChromosomeCombinator
randomGenerator - Variable in class net.bmahe.genetics4j.neat.combination.NeatCombinationHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.AddConnectionPolicyHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.AddNodePolicyHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.AbstractNeatChromosomeConnectionMutationHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddConnection
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeAddNodeMutationHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeConnectionWeightMutationHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteConnection
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.chromosome.NeatChromosomeDeleteNodeMutationHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.DeleteConnectionPolicyHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.DeleteNodePolicyHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.NeatConnectionWeightPolicyHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.mutation.NeatSwitchStatePolicyHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.selection.NeatSelectionPolicyHandler
randomGenerator - Variable in class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl
RecurrentNetwork - Class in net.bmahe.genetics4j.neat: Implements a recurrent neural network evaluator for NEAT chromosomes.
RecurrentNetwork(Set, Set, List, Function) - Constructor for class net.bmahe.genetics4j.neat.RecurrentNetwork
RecurrentNetwork(Set, Set, List, Function, int, float, float) - Constructor for class net.bmahe.genetics4j.neat.RecurrentNetwork
reenableGeneInheritanceThresold - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder
reenableGeneInheritanceThresold - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
reenableGeneInheritanceThresold - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
reenableGeneInheritanceThresold() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
reenableGeneInheritanceThresold() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: Returns the threshold for re-enabling disabled genes during crossover.
reenableGeneInheritanceThresold() - Method in interface net.bmahe.genetics4j.neat.spec.combination.NeatCombination: Returns the threshold for re-enabling disabled genes during crossover.
reenableGeneInheritanceThresold(double) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder: Initializes the value for the reenableGeneInheritanceThresold attribute.
reenableGeneInheritanceThresold(double) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
reenableGeneInheritanceThresoldBuildStage - Variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.InitShim
reenableGeneInheritanceThresoldInitialize() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
reenableGeneInheritanceThresoldIsSet() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination.Builder
registerExistingNodeIds(Collection) - Method in class net.bmahe.genetics4j.neat.NodeIdManager: Registers node IDs already present in a chromosome before new IDs are allocated.
registerSplit(int, int) - Method in class net.bmahe.genetics4j.neat.NodeIdManager: Registers a known relationship between an ancestral connection and an existing hidden node.
resetCache() - Method in class net.bmahe.genetics4j.neat.InnovationManager: Resets the innovation cache, clearing all cached connection-to-innovation-number mappings.
resetState() - Method in class net.bmahe.genetics4j.neat.RecurrentNetwork
resolve(ChromosomeCombinatorResolver, CombinationPolicy, ChromosomeSpec) - Method in class net.bmahe.genetics4j.neat.combination.NeatCombinationHandler: Resolves a NEAT combination policy into a concrete chromosome combinator.
resolve(AbstractEAExecutionContext, AbstractEAConfiguration, SelectionPolicyHandlerResolver, SelectionPolicy) - Method in class net.bmahe.genetics4j.neat.selection.NeatSelectionPolicyHandler: Resolves a NEAT selection policy into a concrete selector implementation.

S

select(AbstractEAConfiguration, long, int, List, List) - Method in class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl
shouldReEnable(Connection, Connection) - Method in class net.bmahe.genetics4j.neat.combination.NeatChromosomeCombinator: Determines whether a disabled gene should be re-enabled during crossover.
sigmoid - Static variable in class net.bmahe.genetics4j.neat.Activations: Standard sigmoid activation function for double values (steepness = 1.0).
sigmoid(double) - Static method in class net.bmahe.genetics4j.neat.Activations: Creates a sigmoid activation function with specified steepness for double values.
sigmoidFloat - Static variable in class net.bmahe.genetics4j.neat.Activations: Standard sigmoid activation function for float values (steepness = 1.0).
sigmoidFloat(float) - Static method in class net.bmahe.genetics4j.neat.Activations: Creates a sigmoid activation function with specified steepness for float values.
speciate(RandomGenerator, SpeciesIdGenerator, List, Population, BiPredicate) - Static method in class net.bmahe.genetics4j.neat.NeatUtils
Species<T> - Class in net.bmahe.genetics4j.neat: Represents a species in the NEAT (NeuroEvolution of Augmenting Topologies) algorithm.
Species(int, List) - Constructor for class net.bmahe.genetics4j.neat.Species: Constructs a new species with the specified ID and founding ancestors.
speciesIdGenerator - Variable in class net.bmahe.genetics4j.neat.selection.NeatSelectionPolicyHandler
speciesIdGenerator - Variable in class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl
SpeciesIdGenerator - Class in net.bmahe.genetics4j.neat: Generates unique identifiers for NEAT (NeuroEvolution of Augmenting Topologies) species.
SpeciesIdGenerator() - Constructor for class net.bmahe.genetics4j.neat.SpeciesIdGenerator: Constructs a new species ID generator with the default initial value (0).
SpeciesIdGenerator(int) - Constructor for class net.bmahe.genetics4j.neat.SpeciesIdGenerator: Constructs a new species ID generator with the specified initial value.
speciesPredicate - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
speciesPredicate - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
speciesPredicate() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Returns the predicate used to determine species membership.
speciesPredicate() - Method in class net.bmahe.genetics4j.neat.spec.selection.NeatSelection: Returns the predicate used to determine species membership.
speciesPredicate(BiPredicate) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder: Initializes the value for the speciesPredicate attribute.
speciesSelection - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder
speciesSelection - Variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
speciesSelection() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Returns the selection policy used within each species.
speciesSelection() - Method in class net.bmahe.genetics4j.neat.spec.selection.NeatSelection: Returns the selection policy used within each species.
speciesSelection(SelectionPolicy) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection.Builder: Initializes the value for the speciesSelection attribute.
speciesSelector - Variable in class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl
splitInnovationsByNodeId - Variable in class net.bmahe.genetics4j.neat.NodeIdManager
splitNodeIds - Variable in class net.bmahe.genetics4j.neat.NodeIdManager
STAGE_INITIALIZED - Static variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
STAGE_INITIALIZED - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
STAGE_INITIALIZED - Static variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
STAGE_INITIALIZING - Static variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
STAGE_INITIALIZING - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
STAGE_INITIALIZING - Static variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
STAGE_UNINITIALIZED - Static variable in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
STAGE_UNINITIALIZED - Static variable in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
STAGE_UNINITIALIZED - Static variable in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
standard() - Static method in class net.bmahe.genetics4j.neat.NeatEAExecutionContexts: Creates a standard NEAT execution context builder with default configuration.
step(Map) - Method in class net.bmahe.genetics4j.neat.RecurrentNetwork
SwitchStateMutation - Class in net.bmahe.genetics4j.neat.spec.mutation
SwitchStateMutation() - Constructor for class net.bmahe.genetics4j.neat.spec.mutation.SwitchStateMutation

T

tanh - Static variable in class net.bmahe.genetics4j.neat.Activations: Hyperbolic tangent activation function for double values.
tanhFloat - Static variable in class net.bmahe.genetics4j.neat.Activations: Hyperbolic tangent activation function for float values.
to - Variable in record class net.bmahe.genetics4j.neat.ConnectionPair: The field for the to record component.
to() - Method in record class net.bmahe.genetics4j.neat.ConnectionPair: Returns the value of the to record component.
toNodeIndex - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
toNodeIndex - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection
toNodeIndex() - Method in interface net.bmahe.genetics4j.neat.Connection: Returns the index of the target node for this connection.
toNodeIndex() - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Returns the index of the target node for this connection.
toNodeIndex(int) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder: Initializes the value for the toNodeIndex attribute.
toString() - Method in class net.bmahe.genetics4j.neat.chromosomes.NeatChromosome
toString() - Method in record class net.bmahe.genetics4j.neat.combination.parentcompare.ChosenOtherChromosome: Returns a string representation of this record class.
toString() - Method in record class net.bmahe.genetics4j.neat.ConnectionPair: Returns a string representation of this record class.
toString() - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Prints the immutable value Connection with attribute values.
toString() - Method in record class net.bmahe.genetics4j.neat.NodeIdManagerRegistry.LayoutKey: Returns a string representation of this record class.
toString() - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: Prints the immutable value NeatCombination with attribute values.
toString() - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessComparison: Prints the immutable value FitnessComparison.
toString() - Method in class net.bmahe.genetics4j.neat.spec.combination.parentcompare.ImmutableFitnessThenSizeComparison: Prints the immutable value FitnessThenSizeComparison.
toString() - Method in class net.bmahe.genetics4j.neat.spec.ContiguousNeatNodeLayout
toString() - Method in class net.bmahe.genetics4j.neat.spec.ExplicitNeatNodeLayout
toString() - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Prints the immutable value NeatChromosomeSpec with attribute values.
toString() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection: Prints the immutable value AddConnection with attribute values.
toString() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode: Prints the immutable value AddNode with attribute values.
toString() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection: Prints the immutable value DeleteConnection with attribute values.
toString() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode: Prints the immutable value DeleteNode with attribute values.
toString() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight: Prints the immutable value NeatConnectionWeight with attribute values.
toString() - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation: Prints the immutable value SwitchStateMutation with attribute values.
toString() - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Prints the immutable value NeatSelection with attribute values.
toString() - Method in class net.bmahe.genetics4j.neat.Species
trimSpecies(Species, Comparator, int, float) - Method in class net.bmahe.genetics4j.neat.selection.NeatSelectorImpl: Trims a species by removing lower-performing individuals while preserving minimum viable size.

V

validate(List, List, long, long) - Static method in class net.bmahe.genetics4j.neat.spec.NeatNodeLayoutValidation
validate(ImmutableConnection) - Static method in class net.bmahe.genetics4j.neat.ImmutableConnection
validate(ImmutableNeatCombination) - Static method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination
validate(ImmutableNeatChromosomeSpec) - Static method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec
validate(ImmutableAddConnection) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection
validate(ImmutableAddNode) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode
validate(ImmutableDeleteConnection) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection
validate(ImmutableDeleteNode) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode
validate(ImmutableNeatConnectionWeight) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight
validate(ImmutableSwitchStateMutation) - Static method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation
validate(ImmutableNeatSelection) - Static method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection
validateExternalId(Integer, long, long) - Static method in class net.bmahe.genetics4j.neat.spec.NeatNodeLayoutValidation

W

weight - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder
weight - Variable in class net.bmahe.genetics4j.neat.ImmutableConnection
weight() - Method in interface net.bmahe.genetics4j.neat.Connection: Returns the weight of this connection.
weight() - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Returns the weight of this connection.
weight(float) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection.Builder: Initializes the value for the weight attribute.
withFromNodeIndex(int) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Copy the current immutable object by setting a value for the fromNodeIndex attribute.
withInheritanceThresold(double) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: Copy the current immutable object by setting a value for the inheritanceThresold attribute.
withInnovation(int) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Copy the current immutable object by setting a value for the innovation attribute.
withIsEnabled(boolean) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Copy the current immutable object by setting a value for the isEnabled attribute.
withMaxWeightValue(float) - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Copy the current immutable object by setting a value for the maxWeightValue attribute.
withMinSpeciesSize(int) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Copy the current immutable object by setting a value for the minSpeciesSize attribute.
withMinWeightValue(float) - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Copy the current immutable object by setting a value for the minWeightValue attribute.
withNewValuesDistribution(Distribution) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight: Copy the current immutable object by setting a value for the newValuesDistribution attribute.
withNodeLayout(NeatNodeLayout) - Method in class net.bmahe.genetics4j.neat.spec.ImmutableNeatChromosomeSpec: Copy the current immutable object by setting a value for the nodeLayout attribute.
withParentComparisonPolicy(ParentComparisonPolicy) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: Copy the current immutable object by setting a value for the parentComparisonPolicy attribute.
withPerSpeciesKeepRatio(float) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Copy the current immutable object by setting a value for the perSpeciesKeepRatio attribute.
withPerturbationDistribution(Distribution) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight: Copy the current immutable object by setting a value for the perturbationDistribution attribute.
withPerturbationRatio(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight: Copy the current immutable object by setting a value for the perturbationRatio attribute.
withPopulationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddConnection: Copy the current immutable object by setting a value for the populationMutationProbability attribute.
withPopulationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableAddNode: Copy the current immutable object by setting a value for the populationMutationProbability attribute.
withPopulationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteConnection: Copy the current immutable object by setting a value for the populationMutationProbability attribute.
withPopulationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableDeleteNode: Copy the current immutable object by setting a value for the populationMutationProbability attribute.
withPopulationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableNeatConnectionWeight: Copy the current immutable object by setting a value for the populationMutationProbability attribute.
withPopulationMutationProbability(double) - Method in class net.bmahe.genetics4j.neat.spec.mutation.ImmutableSwitchStateMutation: Copy the current immutable object by setting a value for the populationMutationProbability attribute.
withReenableGeneInheritanceThresold(double) - Method in class net.bmahe.genetics4j.neat.spec.combination.ImmutableNeatCombination: Copy the current immutable object by setting a value for the reenableGeneInheritanceThresold attribute.
withSpeciesPredicate(BiPredicate) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Copy the current immutable object by setting a value for the speciesPredicate attribute.
withSpeciesSelection(SelectionPolicy) - Method in class net.bmahe.genetics4j.neat.spec.selection.ImmutableNeatSelection: Copy the current immutable object by setting a value for the speciesSelection attribute.
withToNodeIndex(int) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Copy the current immutable object by setting a value for the toNodeIndex attribute.
withWeight(float) - Method in class net.bmahe.genetics4j.neat.ImmutableConnection: Copy the current immutable object by setting a value for the weight attribute.

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